H5JYVAFXY_n02_wildtype-2_gp_b.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5JYVAFXY_n02_wildtype-2_gp_b.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3359842
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	5228	0.1556025551201515	Illumina Single End PCR Primer 1 (100% over 51bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	4642	0.13816125877347804	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGGCA	40	6.7539077E-9	45.05126	1
ACGCGCA	35	1.202061E-7	45.051258	1
GTCCCCC	45	3.8562575E-10	45.005642	45
GTCGCCC	605	0.0	44.26175	45
GTAGCCC	80	0.0	42.19279	45
GTCGCCG	1720	0.0	42.127377	45
TGGCGCA	75	0.0	42.047844	1
TTGCGCA	50	1.0713848E-9	40.54613	1
CGGGGCA	140	0.0	40.22434	1
CGCCGCA	45	1.9108484E-8	40.045567	1
GCGCCGA	30	1.1327724E-4	37.54272	1
CAGTTCG	105	0.0	36.47007	1
AGCCGGA	75	1.8189894E-12	36.041008	1
CCGGTTA	25	0.0020959405	36.041008	1
GTTAGCC	25	0.0021070032	36.00237	44
CGGATCG	445	0.0	35.43358	1
GCCTCAG	90	0.0	35.036736	2
CGGTGGG	5255	0.0	34.55714	45
CCGTGGG	235	0.0	34.47241	45
CGGGCAA	105	0.0	34.324768	1