H5JYVAFXY_n02_wildtype-1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5JYVAFXY_n02_wildtype-1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2347222
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	3951	0.16832664315518514	Illumina Single End PCR Primer 1 (100% over 51bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2953	0.12580829593451323	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCCCA	40	6.7575456E-9	45.046844	1
GGCTCAG	75	0.0	45.04204	2
GTCGCCC	430	0.0	44.485085	45
GTAGCCC	70	0.0	41.793552	45
GTCGCCG	1200	0.0	41.63281	45
TGGCGCA	65	0.0	41.581703	1
CGAGCCA	50	1.0713848E-9	40.542164	1
CGGCCTA	45	1.9121217E-8	40.04164	1
CCGGGGA	40	3.4321602E-7	39.41599	1
ACGCACA	40	3.4321602E-7	39.41599	1
GTCCCAG	40	3.4350342E-7	39.411785	2
TCGCGCA	70	0.0	38.61158	1
CAGCGCA	30	1.1333214E-4	37.53904	1
TTGGCCA	30	1.1333214E-4	37.53904	1
TGGCCCA	30	1.1333214E-4	37.53904	1
CGGGGCA	210	0.0	37.53904	1
TGCGCTA	30	1.1333214E-4	37.53904	1
TGCGCCA	30	1.1333214E-4	37.53904	1
TGTCGCC	175	0.0	37.291122	44
CGAGGCA	85	0.0	37.097404	1