H5JYVAFXY_n01_undetermined.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5JYVAFXY_n01_undetermined.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14748602
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	37681	0.25548862190463884	No Hit
CTCTTTCCCTACACGACGCTCTTCCGATCTAGATCGGAAGAGCACACGTCT	22781	0.15446209749235892	Illumina Single End PCR Primer 1 (100% over 30bp)
CTCTTTCCCTACACGACGCTCTTCCGATCAGATCGGAAGAGCACACGTCTG	18985	0.12872406483000898	Illumina Single End PCR Primer 1 (96% over 29bp)
CACTCTTTCCCTACACGACGCTCTTCCGATAGATCGGAAGAGCACACGTCT	16751	0.11357686647181882	Illumina Single End PCR Primer 1 (96% over 30bp)
CACTCTTTCCCTACACGACGCTCTTCCGATCAGATCGGAAGAGCACACGTC	16380	0.11106137381698958	Illumina Single End PCR Primer 1 (96% over 31bp)
CTCTTTCCCTACACGACGCTCTTCCGATAGATCGGAAGAGCACACGTCTGA	15852	0.10748137348882288	Illumina Single End PCR Primer 1 (96% over 28bp)
CTTTCCCTACACGACGCTCTTCCGATCTAGATCGGAAGAGCACACGTCTGA	14975	0.10153504718616721	Illumina Single End PCR Primer 1 (100% over 28bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACACTCT	80940	30.02175	1
GTCTTTC	15735	29.631056	1
GATCGCG	3410	26.147125	45
GACTCTT	5675	26.078024	1
GTTTCCC	18095	25.219593	1
CATCGGG	2360	24.709896	45
TATCGGG	3365	24.690191	45
GCACTCT	6540	24.176432	1
GATGGGG	4700	24.048555	45
GATGGCG	3910	23.667273	45
AATCGCG	2045	23.561537	45
AATCGGG	2515	23.36607	45
TATCGCG	2425	23.211939	45
GATGTCG	6630	23.092901	45
TCACTCT	38370	22.233389	1
TATCTCG	8520	21.960617	45
CCCCGAG	2775	21.799868	2
CATGGGG	2310	21.24847	45
TGATGGG	8650	20.875717	45
GTGTTTC	3600	20.74198	1