FastQCFastQC Report
Thu 23 Feb 2023
H5JMGDSX5_n01_f3HRB0341.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5JMGDSX5_n01_f3HRB0341.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123937921
Sequences flagged as poor quality0
Sequence length151
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA3804120.30693753528429774No Hit
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG2957080.2385936423768154No Hit
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT2792480.22531279994603104No Hit
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC2649060.2137408775801556No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)