FastQCFastQC Report
Thu 23 Feb 2023
H5JMGDSX5_n01_f3HRB0333.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5JMGDSX5_n01_f3HRB0333.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences162104680
Sequences flagged as poor quality0
Sequence length151
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA2811600.17344348108888652No Hit
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG2107210.12999069490159076No Hit
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT2016530.12439677867412588No Hit
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC1817050.11209114999024088No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)