[2022-05-21 03:14:03,930] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2022-05-21 03:14:03,930] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2022-05-21 03:14:03,930] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-05-21 03:14:03,931] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2022-05-21 03:14:03,931] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2022-05-21 03:14:03,931] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H5JGTDRX2/merged [2022-05-21 03:14:04,354] multiqc [WARNING] MultiQC Version v1.12 now available! [2022-05-21 03:14:04,354] multiqc [INFO ] This is MultiQC v1.9 [2022-05-21 03:14:04,354] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H5JGTDRX2/merged [2022-05-21 03:14:04,355] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H5JGTDRX2/merged [2022-05-21 03:14:04,355] multiqc [INFO ] Template : default [2022-05-21 03:14:04,355] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2022-05-21 03:14:04,355] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H5JGTDRX2/merged [2022-05-21 03:14:04,355] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-05-21 03:14:04,355] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-19890679/tmp9hshd1_o [2022-05-21 03:14:04,460] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H5JGTDRX2_1_fastqc.html [2022-05-21 03:14:04,463] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H5JGTDRX2_1_fastqc.html [2022-05-21 03:14:04,513] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H5JGTDRX2_2_fastqc.html [2022-05-21 03:14:04,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H5JGTDRX2_2_fastqc.html [2022-05-21 03:14:04,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H5JGTDRX2_3_fastqc.html [2022-05-21 03:14:04,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H5JGTDRX2_3_fastqc.html [2022-05-21 03:14:04,942] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2022-05-21 03:14:04,943] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2022-05-21 03:14:04,947] multiqc.modules.custom_content.custom_content [WARNING] Not able to parse custom data in undetermined_barcodes_mqc.txt [2022-05-21 03:14:04,949] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2022-05-21 03:14:04,958] multiqc [DEBUG ] No samples found: conpair [2022-05-21 03:14:04,966] multiqc [DEBUG ] No samples found: peddy [2022-05-21 03:14:04,972] multiqc [DEBUG ] No samples found: somalier [2022-05-21 03:14:04,977] multiqc [DEBUG ] No samples found: methylQA [2022-05-21 03:14:04,987] multiqc [DEBUG ] No samples found: mosdepth [2022-05-21 03:14:04,993] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-05-21 03:14:04,996] multiqc [DEBUG ] No samples found: qualimap [2022-05-21 03:14:05,002] multiqc [DEBUG ] No samples found: preseq [2022-05-21 03:14:05,007] multiqc [DEBUG ] No samples found: quast [2022-05-21 03:14:05,014] multiqc [DEBUG ] No samples found: qorts [2022-05-21 03:14:05,019] multiqc [DEBUG ] No samples found: rna_seqc [2022-05-21 03:14:05,026] multiqc [DEBUG ] No samples found: rockhopper [2022-05-21 03:14:05,031] multiqc [DEBUG ] No samples found: rsem [2022-05-21 03:14:05,045] multiqc [DEBUG ] No samples found: rseqc [2022-05-21 03:14:05,051] multiqc [DEBUG ] No samples found: busco [2022-05-21 03:14:05,057] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-05-21 03:14:05,061] multiqc [DEBUG ] No samples found: disambiguate [2022-05-21 03:14:05,068] multiqc [DEBUG ] No samples found: supernova [2022-05-21 03:14:05,085] multiqc [DEBUG ] No samples found: deeptools [2022-05-21 03:14:05,089] multiqc [DEBUG ] No samples found: sargasso [2022-05-21 03:14:05,093] multiqc [DEBUG ] No samples found: verifybamid [2022-05-21 03:14:05,098] multiqc [DEBUG ] No samples found: mirtrace [2022-05-21 03:14:05,104] multiqc [DEBUG ] No samples found: happy [2022-05-21 03:14:05,109] multiqc [DEBUG ] No samples found: mirtop [2022-05-21 03:14:05,118] multiqc [DEBUG ] No samples found: homer [2022-05-21 03:14:05,122] multiqc [DEBUG ] No samples found: macs2 [2022-05-21 03:14:05,129] multiqc [DEBUG ] No samples found: theta2 [2022-05-21 03:14:05,135] multiqc [DEBUG ] No samples found: snpeff [2022-05-21 03:14:05,145] multiqc [DEBUG ] No samples found: gatk [2022-05-21 03:14:05,151] multiqc [DEBUG ] No samples found: htseq [2022-05-21 03:14:05,156] multiqc [DEBUG ] No samples found: bcftools [2022-05-21 03:14:05,161] multiqc [DEBUG ] No samples found: featureCounts [2022-05-21 03:14:05,169] multiqc [DEBUG ] No samples found: fgbio [2022-05-21 03:14:05,189] multiqc [DEBUG ] No samples found: dragen [2022-05-21 03:14:05,193] multiqc [DEBUG ] No samples found: dedup [2022-05-21 03:14:05,198] multiqc [DEBUG ] No samples found: damageprofiler [2022-05-21 03:14:05,232] multiqc [DEBUG ] No samples found: biobambam2 [2022-05-21 03:14:05,237] multiqc [DEBUG ] No samples found: mtnucratio [2022-05-21 03:14:05,239] multiqc [DEBUG ] No samples found: picard [2022-05-21 03:14:05,244] multiqc [DEBUG ] No samples found: prokka [2022-05-21 03:14:05,249] multiqc [DEBUG ] No samples found: samblaster [2022-05-21 03:14:05,257] multiqc [DEBUG ] No samples found: samtools [2022-05-21 03:14:05,262] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-05-21 03:14:05,268] multiqc [DEBUG ] No samples found: bamtools [2022-05-21 03:14:05,274] multiqc [DEBUG ] No samples found: jellyfish [2022-05-21 03:14:05,282] multiqc [DEBUG ] No samples found: vcftools [2022-05-21 03:14:05,287] multiqc [DEBUG ] No samples found: longranger [2022-05-21 03:14:05,292] multiqc [DEBUG ] No samples found: stacks [2022-05-21 03:14:05,297] multiqc [DEBUG ] No samples found: varscan2 [2022-05-21 03:14:05,313] multiqc [DEBUG ] No samples found: bbmap [2022-05-21 03:14:05,319] multiqc [DEBUG ] No samples found: bismark [2022-05-21 03:14:05,324] multiqc [DEBUG ] No samples found: biscuit [2022-05-21 03:14:05,329] multiqc [DEBUG ] No samples found: hicexplorer [2022-05-21 03:14:05,334] multiqc [DEBUG ] No samples found: hicup [2022-05-21 03:14:05,340] multiqc [DEBUG ] No samples found: hicpro [2022-05-21 03:14:05,346] multiqc [DEBUG ] No samples found: salmon [2022-05-21 03:14:05,350] multiqc [DEBUG ] No samples found: kallisto [2022-05-21 03:14:05,355] multiqc [DEBUG ] No samples found: slamdunk [2022-05-21 03:14:05,360] multiqc [DEBUG ] No samples found: star [2022-05-21 03:14:05,366] multiqc [DEBUG ] No samples found: hisat2 [2022-05-21 03:14:05,370] multiqc [DEBUG ] No samples found: tophat [2022-05-21 03:14:05,375] multiqc [DEBUG ] No samples found: bowtie2 [2022-05-21 03:14:05,381] multiqc [DEBUG ] No samples found: bowtie1 [2022-05-21 03:14:05,385] multiqc [DEBUG ] No samples found: snpsplit [2022-05-21 03:14:05,389] multiqc [DEBUG ] No samples found: kat [2022-05-21 03:14:05,394] multiqc [DEBUG ] No samples found: leehom [2022-05-21 03:14:05,398] multiqc [DEBUG ] No samples found: adapterRemoval [2022-05-21 03:14:05,403] multiqc [DEBUG ] No samples found: clipandmerge [2022-05-21 03:14:05,408] multiqc [DEBUG ] No samples found: cutadapt [2022-05-21 03:14:05,412] multiqc [DEBUG ] No samples found: flexbar [2022-05-21 03:14:05,417] multiqc [DEBUG ] No samples found: kaiju [2022-05-21 03:14:05,422] multiqc [DEBUG ] No samples found: kraken [2022-05-21 03:14:05,427] multiqc [DEBUG ] No samples found: malt [2022-05-21 03:14:05,435] multiqc [DEBUG ] No samples found: trimmomatic [2022-05-21 03:14:05,444] multiqc [DEBUG ] No samples found: sickle [2022-05-21 03:14:05,451] multiqc [DEBUG ] No samples found: skewer [2022-05-21 03:14:05,457] multiqc [DEBUG ] No samples found: sortmerna [2022-05-21 03:14:05,465] multiqc [DEBUG ] No samples found: biobloomtools [2022-05-21 03:14:05,474] multiqc [DEBUG ] No samples found: fastq_screen [2022-05-21 03:14:05,483] multiqc [DEBUG ] No samples found: afterqc [2022-05-21 03:14:05,490] multiqc [DEBUG ] No samples found: fastp [2022-05-21 03:14:05,547] multiqc.modules.fastqc.fastqc [INFO ] Found 3 reports [2022-05-21 03:14:05,592] multiqc [DEBUG ] No samples found: pycoqc [2022-05-21 03:14:05,598] multiqc [DEBUG ] No samples found: minionqc [2022-05-21 03:14:05,607] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-05-21 03:14:05,616] multiqc [DEBUG ] No samples found: clusterflow [2022-05-21 03:14:05,622] multiqc [DEBUG ] No samples found: bcl2fastq [2022-05-21 03:14:05,629] multiqc [DEBUG ] No samples found: interop [2022-05-21 03:14:05,637] multiqc [DEBUG ] No samples found: ivar [2022-05-21 03:14:05,644] multiqc [DEBUG ] No samples found: flash [2022-05-21 03:14:05,651] multiqc [DEBUG ] No samples found: seqyclean [2022-05-21 03:14:05,651] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2022-05-21 03:14:05,651] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2022-05-21 03:14:05,651] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2022-05-21 03:14:05,656] multiqc [INFO ] Compressing plot data [2022-05-21 03:14:05,708] multiqc [INFO ] Report : multiqc_report.html [2022-05-21 03:14:05,708] multiqc [INFO ] Data : multiqc_data [2022-05-21 03:14:05,708] multiqc [DEBUG ] Moving data file from '/state/partition1/job-19890679/tmp9hshd1_o/multiqc_data' to '/scratch/gencore/logs/html/H5JGTDRX2/merged/multiqc_data' [2022-05-21 03:14:05,856] multiqc [INFO ] MultiQC complete