FastQCFastQC Report
Sat 21 May 2022
H5JGTDRX2_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5JGTDRX2_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1062805577
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACAGT22971412021.613936261834272No Hit
ATGCTGAA22047258820.7443950964514No Hit
GGATGCCG19254041118.11624018228124No Hit
TATGATTC18663217217.560330510008228No Hit
TGCCGTGG451432314.247553078092288No Hit
CTAGACCT428305474.029951284307195No Hit
GAGATGAC403148093.793244020585338No Hit
ACTTCATA392835143.6962088692539856No Hit
GGGGGGGG247459712.328362923146385No Hit
CCACAGTA32309800.3040048029405476No Hit
GATGCCGA14755020.13883084845724328No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)