H5HVHBGX2_n01_4s-11_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5HVHBGX2_n01_4s-11_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17104546
Sequences flagged as poor quality	0
Sequence length	75
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	40349	0.23589635176519738	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACTAATTCGAACTGTGAAACTG	22775	0.13315173638633848	No Hit
GCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCCATCCCTCCGC	22415	0.131047032759595	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	21003	0.1227919174235902	TruSeq Adapter, Index 20 (97% over 44bp)
GCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTA	20928	0.12235343750135198	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	4775	44.208164	45
CTCGTAT	4600	42.96047	44
GTCACGT	5135	41.733364	29
TATGCCG	5125	40.84794	48
CGTATGC	5365	39.924316	46
GCCTTAT	5335	38.263718	37
ACGTCTG	5945	36.641037	15
TCACGTG	5880	36.62961	30
TATCTCG	5255	36.288193	41
CACGTGG	6120	35.088165	31
AGTCACG	6280	34.341927	28
CCTTATC	5795	33.14081	38
GTATGCC	6500	32.89919	47
CACGTCT	6780	32.58608	14
CAGTCAC	6985	30.921831	27
ATGCCGT	6845	30.178576	49
ACACGTC	7450	29.933107	13
CACACGT	7525	29.497187	12
CTTATCT	6615	28.877182	39
CGTCTGA	7780	28.353333	16