H5HGTAFXX_n01_sv117.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5HGTAFXX_n01_sv117.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26996029
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGCC	1401573	5.191774686565939	TruSeq Adapter, Index 4 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCTGA	163845	43.71038	16
ACACGTC	164955	43.616753	13
ACGTCTG	164400	43.59156	15
TCTCGTA	159285	43.52152	41
CTCGTAT	159585	43.48623	42
TCGTATG	162090	43.484623	43
AATCTCG	158965	43.484577	39
CGTATGC	162535	43.4417	44
ATCTCGT	159760	43.33579	40
CACGTCT	165585	43.327152	14
ATCGGAA	164965	43.287575	2
GCACACG	166725	43.278484	11
GTATGCC	163490	43.208668	45
TCGGAAG	165210	43.1975	3
CACACGT	166635	43.189163	12
GATCGGA	160250	43.15146	1
CGGAAGA	167745	43.016754	4
ACCAATC	160405	42.57668	36
GACCAAT	162990	42.48808	35
ACTGACC	163610	42.429775	32