H5HGTAFXX_n01_sv116.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5HGTAFXX_n01_sv116.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26954564
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	724540	2.6880048959426683	TruSeq Adapter, Index 2 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACCGAT	83580	43.677303	31
TCGTATG	82550	43.671875	43
CGATGTA	82530	43.662968	34
CTCGTAT	82410	43.658703	42
ACCGATG	83360	43.64936	32
TCTCGTA	83070	43.604343	41
CGTATGC	83090	43.585808	44
CCGATGT	82845	43.521393	33
TATCTCG	82670	43.455994	39
GTCACCG	84680	43.41903	29
CGTCTGA	86120	43.25354	16
ATCTCGT	83930	43.20036	40
TCACCGA	85030	43.168865	30
ACGTCTG	86550	43.038647	15
ACACGTC	87055	42.951805	13
GTATGCC	84760	42.79341	45
CACGTCT	87720	42.513332	14
ATCGGAA	87645	42.289738	2
GCACACG	88600	42.25719	11
GATCGGA	85205	42.154446	1