H5GGKBGX2_n01_9w-41_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5GGKBGX2_n01_9w-41_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19509118
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC	63187	0.3238844523878527	TruSeq Adapter, Index 4 (100% over 50bp)
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATA	34058	0.17457478087938164	No Hit
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGA	27451	0.1407085650924865	No Hit
CTTAAACCTATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCCG	27358	0.14023186491567685	No Hit
GTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGCGGGATA	25415	0.13027241928620248	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA	22397	0.11480272967747697	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTA	22350	0.11456181668489576	No Hit
CTGACATGCGTGCGAGTCGACGGGTTCTGAAACCTGGGATGCGCAAGGAA	21384	0.10961028581609891	No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGA	21264	0.1089951888137639	No Hit
CTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCATTGTTTCT	20734	0.10627851038678426	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	7835	60.84909	42
TCGTATG	8810	60.0427	43
TATGCCG	8825	59.788563	46
ACTGACC	9270	57.362663	32
ACGTCTG	9540	56.580585	15
AGTCACT	9595	55.68533	28
ATGCCGT	9530	55.297646	47
CACGTCT	9905	54.389633	14
CAGTCAC	10075	53.17166	27
ACACGTC	10245	52.789482	13
CGTATGC	10065	52.698112	44
GTATGCC	10105	52.283375	45
GCCGTCT	10140	51.87052	49
CTGACCA	10290	51.744568	33
GTCTGAA	10670	50.622017	17
TGCCGTC	11015	48.067863	48
CAATCTC	9980	47.401466	38
CCGTCTT	11275	46.961838	50
CTGAACT	11670	46.195126	19
ACCAATC	10375	45.996418	36