H5GGKBGX2_n01_9w-07_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5GGKBGX2_n01_9w-07_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18897782
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATA	33670	0.17816905708828687	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC	27957	0.147937996109808	TruSeq Adapter, Index 2 (100% over 50bp)
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGA	24279	0.12847539462567617	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTA	23427	0.12396692902902574	No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGA	22619	0.11969129498900982	No Hit
GCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAAC	22252	0.11774926814162635	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA	21746	0.11507170524032925	No Hit
GCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAAC	19388	0.10259405045523332	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	3885	51.087933	42
TATGCCG	4100	50.640137	46
TCGTATG	4270	48.126945	43
ATGCCGT	5115	41.210533	47
ACGTCTG	5350	39.36324	15
CGTATGC	5315	38.930283	44
GTATGCC	5425	38.14253	45
TATCTCG	5220	38.076496	39
CACGTCT	5760	36.74354	14
CACCGAT	5730	36.574837	31
CAGTCAC	5760	36.206425	27
ACACGTC	5890	36.170135	13
TGTATCT	5655	35.45215	37
GCCGTCT	6070	34.035866	49
CGATGTA	6260	33.195805	34
AGTCACC	6475	32.208088	28
GTCTGAA	6650	31.773716	17
TTACCTC	3970	31.545734	15
TGTTACC	4080	31.295422	13
CCGATGT	6885	30.385395	33