FastQCFastQC Report
Sat 19 Oct 2024
H5GFVBGYW_n01_DO142.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5GFVBGYW_n01_DO142.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16952241
Sequences flagged as poor quality0
Sequence length76
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC796940.47010893721956876TruSeq Adapter, Index 9 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)