FastQCFastQC Report
Sat 19 Oct 2024
H5GFVBGYW_n01_AA89.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5GFVBGYW_n01_AA89.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20532997
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGC537690.2618663023230364TruSeq Adapter, Index 11 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)