FastQCFastQC Report
Sat 28 Jul 2018
H5CCNBCX2_l01n01_antormb7.351000000f3a84.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5CCNBCX2_l01n01_antormb7.351000000f3a84.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15601455
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCATA42650.011.2498794
GTATGCC76700.09.93958146-47
CGGGGAT71100.09.8228241
TATGCCG86150.09.64875248-49
CGGGAAT88000.09.2321341
GGGGGAT45850.08.9114371
CGGGGAC62550.08.8108811
GGGGATC51650.08.6457572
GGGGAAT53450.08.5332051
CCGGGAT61750.08.463391
GGGAATC65900.08.3621522
TGCTTGA101250.08.30360460-61
CGTATGC104050.08.19427946-47
ATGCCGT95900.08.12294848-49
CCCGGAT44700.08.077831
CGGGTAT40750.08.0447051
CTGGAAT71650.07.9570791
GCCGTCT101850.07.90491250-51
CGGGCAT46600.07.850431
CCGTCTT111350.07.82770252-53
Produced by FastQC (version 0.11.2)