FastQCFastQC Report
Sat 28 Jul 2018
H5CCNBCX2_l01n01_antormb6.351000000f3a6a.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH5CCNBCX2_l01n01_antormb6.351000000f3a6a.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15241709
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCATA46500.013.7917514
CTGGGAT45450.010.7669631
AGGTCAT55850.010.5471973
TCTAGAC73150.010.25962457
CGGGGAT65500.010.2274571
CCCGGAT45100.010.1131061
CGGGAAT79700.09.77631951
CTAGACT73200.09.7334978
CTGGAAT76150.09.7329521
CCGGGTT29500.09.5021061
TAATCCC70300.09.45935259
GAGGTCA63750.09.314692
CGGGCAT46050.08.9759311
GGGGAAT47050.08.8861351
CGGGTAT40350.08.3599691
ATTCTAG95800.08.330585
GTTTAAT149500.08.3262611
GGGGGAT39550.08.2888161
CTCGGTT74000.08.2822421
CGGGGTT30450.08.26948451
Produced by FastQC (version 0.11.2)