H5C5YBGXG_n01_AKM119.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H5C5YBGXG_n01_AKM119.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22857525
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC	308210	1.3483962065009225	TruSeq Adapter, Index 6 (100% over 50bp)
GTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCG	41418	0.1812007205504533	No Hit
GTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAA	32724	0.1431651064583764	No Hit
GCAAGTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCA	32443	0.14193575201164604	No Hit
CCGGTTTGTCCCTCTTAACCATTAAATCAGTTCTAGAACCAACAAAAAGA	28524	0.1247904136602716	No Hit
CTAAGAAGTTATACGAACCCGAAGATTCGCCAACTATTTAGCAGGCTAGA	27976	0.12239295374280462	No Hit
CCCGGTTTGTCCCTCTTAACCATTAAATCAGTTCTAGAACCAACAAAAAG	23325	0.1020451689323319	No Hit
CAGCTTTGCAACCATACTACCCCCGGAACCGAAAGACTTTCGTTTCCGGA	23085	0.10099518648672592	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	33745	67.8574	46
ATGCCGT	34455	66.47926	47
TCACGCC	35735	64.178604	30
TATCTCG	36065	63.334885	39
CACGCCA	36765	62.484478	31
GTCACGC	37155	61.95241	29
GCCAATA	37240	61.608295	34
GTATGCC	37380	61.361107	45
TGCCGTC	37485	61.14974	48
CGCCAAT	37445	61.14615	33
GCCGTCT	38220	59.807503	49
CGTATGC	39805	57.763813	44
CTCGTAT	40195	56.800415	42
CCAATAT	42090	54.767723	35
ATATCTC	42260	54.249	38
TCGTATG	43465	52.93001	43
TCTCGTA	43715	52.28269	41
AATATCT	44155	52.062912	37
CGTCTGA	44930	51.99249	16
CACACGT	45530	51.530354	12