FastQCFastQC Report
Tue 4 Jun 2024
H57WGDRX5_n02_R03.Head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57WGDRX5_n02_R03.Head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34280230
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGTATCCAGCGATTACGGAGTAAGACAAGCCGCAACGACAGCATCATC508850.14843832728076795No Hit
CTTTTTTGTGTTAACAACTATCCTCGCCATTATTGGTGAAGGATACTGTG506890.1478665691566247No Hit
CAGGAATTGCTTCATCTGGATTAAGCAGTGGATATTCTGCCTCCAGAGTA469590.1369856619981838No Hit
CGCCGTTCAAGGAATCCAACAAGCAGCATCTGTCCAGGAAGAAAAAATCA450770.13149561715309377No Hit
CGTTATTCCAACTCGAGGACTACTTAAGTATTAATACCAAAGTTTGGCAA443280.12931068432154627No Hit
GTTCAACTTACGGTGCATCAGAATCCGGGTATGTCGGCGGCGGATACGGC402330.11736502351355285No Hit
GGAGCATTCATACAATACTGGAAAGATGACTAACTTTTTTGTGTTAACAA389770.11370110410577759No Hit
CCGAATCTGATGCTGAAAGACAGATCTTCTTTAACCAAATCGTTAGCCAA375770.1096171175047542No Hit
GGAAGATCCGCATCTTACGGTGGATACAGTGCAGTCAGAAGTCAACAACA363540.10604946349543162No Hit
CAACAATCTTCTTACTCAGCTTCTTCAACATCAACAACAGTTAACTACAG361490.10545145117171034No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)