FastQCFastQC Report
Tue 4 Jun 2024
H57WGDRX5_n02_H04.Head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57WGDRX5_n02_H04.Head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45889086
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATTTTCCAGTTTTCAATATTCTTTTACTGTAACCTTGTCTAAAGATGA1176210.2563158481735722No Hit
TCTAAACGTAATACTCTGTTCTGAAGCTTTCACTAAGTTTAAACATGATG1111130.24213382676656495No Hit
CTCTGTTCTGAAGCTTTCACTAAGTTTAAACATGATGAATTTTTCAGGAA915000.19939381664738323No Hit
CTGTTCTGAAGCTTTCACTAAGTTTAAACATGATGAATTTTTCAGGAATG814310.17745178014659083No Hit
GCCAACTTGATTTAGCAAGATGAAATCAGTCGCAGCATTTCTTATCTTAT790590.17228279508552424No Hit
TTTTACTGTAACCTTGTCTAAAGATGATTTGTTCAAGAACGACCAGTGTA702180.15301677614585743No Hit
CAGATTTTCATCATGAAAGTATTAGCAATTCTTTTTACTTTTGTTTTTGC678710.14790227026966718No Hit
GTAATACTCTGTTCTGAAGCTTTCACTAAGTTTAAACATGATGAATTTTT672490.146546828149944No Hit
GAATTTTTCAGGAATGTCAACTGTATTCCTCTTTATGTTACTTCTTGGCG670960.1462134155385008No Hit
CTTTCACTAAGTTTAAACATGATGAATTTTTCAGGAATGTCAACTGTATT662660.1444047066006065No Hit
GAAACTTTTACCTACAAGGATTCATTTGACGTCACAAAAAATTATCCTGA647410.14108147632315013No Hit
CGGTAATGTAGAAAGTAAGAATGGAATACAATCTAGGGGCAATTACAAAG645350.14063256783976913No Hit
TCTAAACGTAATACATTATACAGAGGATTTTCCAGTTTTCAATATTCTTT619260.13494712010607487No Hit
GAAAAATTCATCCTACGTTTAGACGAGGTATATTTAGCTAATGGCGATAA614850.13398610728485638No Hit
CAGGAAACACTGCATATTCCACTTGTGAATTTAAATTGTCTGAAAAAGTT609310.1327788485479968No Hit
CAGGGATTCATTTATAATCACGGACGATTATCCTTTGGGAGAGTATGAAT581620.12674473403109401No Hit
GAAAAGTACACCGCGGATCGTGGTGAACTATATTTGCAAATTAGTAATAG550860.12004161512390987No Hit
CTGTATTCCTCTTTATGTTACTTCTTGGCGTAGCATTATCAGCAGTTGCT519360.11317723782949174No Hit
CTTGATTTAGCAAGATGAAATCAGTCGCAGCATTTCTTATCTTATGTACC501070.10919154066393914No Hit
CTCTAAACGTAATACTCTGTTCTGAAGCTTTCACTAAGTTTAAACATGAT496330.10815861531868383No Hit
CACAGACCAAGATTTTATATGTGCTAGATTAACTTTTAAAATTGTACAAT468300.10205040911034924No Hit
CGCGGATCGTGGTGAACTATATTTGCAAATTAGTAATAGATTAGCTGACT468220.10203297577118882No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)