FastQCFastQC Report
Tue 4 Jun 2024
H57WGDRX5_n02_H02.Head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57WGDRX5_n02_H02.Head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37254334
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATTTTCATCATGAAAGTATTAGCAATTCTTTTTACTTTTGTTTTTGC859270.23064967420971744No Hit
GCCAACTTGATTTAGCAAGATGAAATCAGTCGCAGCATTTCTTATCTTAT624200.1675509754113441No Hit
CAGAAACTGGTAAAAATGGCAGCAGGCAAAATAACATTGTTACTTATCGG564900.15163336432212154No Hit
CTTCAATAGGTTCATCATACTACCCATATCCCCCAGTTTCTCCATTTTAT511010.13716793326650265No Hit
CGGTAATGTAGAAAGTAAGAATGGAATACAATCTAGGGGCAATTACAAAG462590.12417078775317793No Hit
CTCGAAGACAATCCAACCAAAAATGAAGTTTTTCCTTATTCTTTCATGCC460480.12360441069755802No Hit
CTTGATTTAGCAAGATGAAATCAGTCGCAGCATTTCTTATCTTATGTACC417730.11212923575549624No Hit
CAGCAACAGTTGTAATAACAGATTTTCATCATGAAAGTATTAGCAATTCT417100.11196012791424484No Hit
GAAGACTCGAAGACAATCCAACCAAAAATGAAGTTTTTCCTTATTCTTTC411770.1105294218922287No Hit
GACAATTTGAAAGCAACCAATCATGAAATCTTTTGCTTTTTTTGTCTTAG410020.1100596778887525No Hit
CAACAGTTGTAATAACAGATTTTCATCATGAAAGTATTAGCAATTCTTTT392780.10543202839164967No Hit
GGAAAATATAAAAGTAAAGGAAGCAGTGGTGCTGGAAAACGGCATGGTGA391060.10497033714251879No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)