FastQCFastQC Report
Tue 4 Jun 2024
H57WGDRX5_n02_H01.Head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57WGDRX5_n02_H01.Head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45191995
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAAACGTAATACTCTGTTCTGAAGCTTTCACTAAGTTTAAACATGATG698750.1546180911021963No Hit
CTCTGTTCTGAAGCTTTCACTAAGTTTAAACATGATGAATTTTTCAGGAA581880.12875731642296384No Hit
GGATTTTCCAGTTTTCAATATTCTTTTACTGTAACCTTGTCTAAAGATGA563500.12469022445236154No Hit
CAGGGATTCATTTATAATCACGGACGATTATCCTTTGGGAGAGTATGAAT534440.11825988208752458No Hit
CTGTTCTGAAGCTTTCACTAAGTTTAAACATGATGAATTTTTCAGGAATG496230.10980484486245849No Hit
TTTTACTGTAACCTTGTCTAAAGATGATTTGTTCAAGAACGACCAGTGTA476480.10543460185813883No Hit
CAGATTTTCATCATGAAAGTATTAGCAATTCTTTTTACTTTTGTTTTTGC467330.10340990699790968No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)