FastQCFastQC Report
Tue 4 Jun 2024
H57WGDRX5_n02_C03.Head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57WGDRX5_n02_C03.Head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61600648
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGGATCGTCGCAAGACGGACCGAAGCGAAAGCATTTGCCAAGTATGTT1551650.25188858402918096No Hit
GGGGAAGCCGGCCACGGCCGGCAGCCCCGAGGGAAGACGCGGCCGTCGCC1485010.24107051601145496No Hit
CTCACCAGGCCCGGACACCGGAAGGATTGACAGATTGAGAGCTCTTTCTT1288760.20921208491183405No Hit
GTTAGTTTTACCCTACTGATGACACGTCGTTGCGATAGTAATCCTGCTCA1265050.2053630994271359No Hit
CACCAGGCCCGGACACCGGAAGGATTGACAGATTGAGAGCTCTTTCTTGA1203030.19529502351988245No Hit
GACAGATTGAGAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCATGGCCGT1186170.19255803932452137No Hit
GGGAATCCGGTTCCTATTCCGGAACCCGGCTGCGGAACCGTCACTTCGCG1180660.1916635682144123No Hit
CGAGACTCTAGCCTACTAACTAGGCGTACCCGGTATCCACAATCGTGCTA1173300.19046877558820485No Hit
CCGGTTCCTATTCCGGAACCCGGCTGCGGAACCGTCACTTCGCGGGCACT1154440.1874071194835483No Hit
GTCTAACGTGTGCGCGAGTCGTTGGGACAGCGCATGTCGAATCCCGTGGG1096750.17804195825991959No Hit
CTAACGTGTGCGCGAGTCGTTGGGACAGCGCATGTCGAATCCCGTGGGCG1080810.17545432314283446No Hit
CTTAGATGTCCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTC1000920.16248530372602574No Hit
AGCGTGTCTTCCCTGTCCGAAAGGACCGGGTAACCCGCTGAACCTCCTTT997360.16190738772747976No Hit
GGGAAGCCGGCCACGGCCGGCAGCCCCGAGGGAAGACGCGGCCGTCGCCC993060.1612093431224944No Hit
CTTGAATGGGGCCACCGCCCGCAGAGGGTGCCAGGCCTGTAGCGACCGCT979810.15905839172341174No Hit
AGGGAATCCGGTTCCTATTCCGGAACCCGGCTGCGGAACCGTCACTTCGC933980.15161853492190536No Hit
GTGAAATTCTTGGATCGTCGCAAGACGGACCGAAGCGAAAGCATTTGCCA919480.14926466357951299No Hit
CCGGGATTCCCTTAGTAGCTGCGAGCGAACAGGGAAAAGCCCAGCGCCGA878360.14258940912439752No Hit
CTGCTCAGTACGAGAGGAACCGCAGGTTCGGACATTTGGTTCACGCACTC847740.13761868219308343No Hit
ATTTGGTTCACGCACTCGGTCGAGCGGCCGATGGTGCGAAGCTACCATCC844700.13712518089095427No Hit
CCACAATCGTGCTACCGGCGGTCAAATTTCTTCTTAGAGGGACAGGCGGC833670.1353346153111896No Hit
CACGTTTTTACCGCACGTCGGCACGTCGGCTGCCAGATGGCGTCGCCCGA814140.13216419411691901No Hit
GTTTTACCCTACTGATGACACGTCGTTGCGATAGTAATCCTGCTCAGTAC807790.1311333608049058No Hit
CGCTGAACCTCCTTTGTGCTAGGGATTGGGGCTTGCAATTGTTCCCCATG801950.13018531882976297No Hit
CGAGAGGAACCGCAGGTTCGGACATTTGGTTCACGCACTCGGTCGAGCGG799980.1298655169991069No Hit
CCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCAAGTCTCA792790.12869832148518956No Hit
CTCTGAATAACTTTTGGCAGATCGCACGGTCTTCGAACCGGCGACGCATC792240.1286090367101333No Hit
CAGGCCCGGACACCGGAAGGATTGACAGATTGAGAGCTCTTTCTTGATTC777510.12621782809817195No Hit
CGAGAGTCGAAAGGCTCGATTAATATGCTACTTTATTAGGCGTAGCGCCT761210.12357175203741362No Hit
CTTTATTAGGCGTAGCGCCTCGCGGGGCGCGCGTCGCAAGCCCAATGGCC752450.12214968907469934No Hit
CGGACGGCGAGTCCAAGTCCATCTTGAATGGGGCCACCGCCCGCAGAGGG742440.12052470616867536No Hit
GGAAAAGCCCAGCGCCGAATCCCGCGGGCCAGGCCCGCCGGGAAATGTGG734710.11926984923924826No Hit
CGCCCGCAGAGGGTGCCAGGCCTGTAGCGACCGCTTCCGTTGCGAGGTGG728180.11820979545539845No Hit
GAGAAATCCGTCGGCTTACCGGGATCCGAGCTCGGTCTCGTGCCTTGGCC724940.11768382696233975No Hit
TGCAAACAGAGTCCCGACCAGAAATGGAAGGGACGCTTTTATTAGATCAA723310.11741921935626391No Hit
CTCCATCTAAGGCTAAATACGACCACGAGACCGATAGCGAACAAGTACCG719300.11676825217812645No Hit
GAAGGATTGACAGATTGAGAGCTCTTTCTTGATTCGGTGGGTGGTGGTGC718880.11670007107717438No Hit
CAGAAATGGAAGGGACGCTTTTATTAGATCAAAACCAATCGACGTCCGTC712300.11563190049559217No Hit
CGGCAAAGTGGGCTGCTGCCCGCCGGTTTTTCCGGCCGGCTCGGCCGTTA699590.11356861051201929No Hit
GGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCAC693620.11259946486277222No Hit
CGCAGGTTCGGACATTTGGTTCACGCACTCGGTCGAGCGGCCGATGGTGC688200.11171960398858143No Hit
CAACGATCAACTCAGAACTGGCACGGACCGGGGGAATCCGACTGTCTAAT678370.11012384155439404No Hit
AAGAAATTCAAGCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCT675340.10963196361181136No Hit
CGGGGAGGTAGTGACGAAAAATAACGATACGGGACTCATCCGAGGCCCCG665550.1080426946158099No Hit
CTTGGCTCGTGGGTCGATGAAGAACGCAGCAAAATGCGTGACTATATGTG658510.10689984949508974No Hit
CAACTGTCGATGGTAGGTTCTGCGCCTACCATGGTTGTAACGGGTAACGG652870.10598427471087643No Hit
CAAATGTCTGCCTTATCAACTGTCGATGGTAGGTTCTGCGCCTACCATGG647540.10511902407260391No Hit
CGACTGTCTAATTAAAGCAAAGCATTGCGATGGCCCCAGCTGGGTGTTTA645050.10471480754553102No Hit
TAACAACTCACCTGCCGAAGCAACTAGCCCTGAAAATGGATGGCGCTCTA629950.10226353463035No Hit
CACGTCGTTGCGATAGTAATCCTGCTCAGTACGAGAGGAACCGCAGGTTC629650.10221483384395566No Hit
GTGGGATTACCCGCTGAATTTAAGCATATCACTAAGCGGAGGAAAAGAAA617860.1003008929386587No Hit
CTGGAATCCTATAGCAGGGAGATAGGGTTTGGAACGCGAAGAGCACCGCA617320.10021323152314891No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)