FastQCFastQC Report
Tue 4 Jun 2024
H57WGDRX5_n02_C02.Head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57WGDRX5_n02_C02.Head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44971676
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATTTTCATCATGAAAGTATTAGCAATTCTTTTTACTTTTGTTTTTGC808610.17980428392306305No Hit
CAGAAACTGGTAAAAATGGCAGCAGGCAAAATAACATTGTTACTTATCGG693160.15413257002029457No Hit
CGGTAATGTAGAAAGTAAGAATGGAATACAATCTAGGGGCAATTACAAAG608900.13539633257163908No Hit
GCCAACTTGATTTAGCAAGATGAAATCAGTCGCAGCATTTCTTATCTTAT593780.13203421638099502No Hit
CTTCAATAGGTTCATCATACTACCCATATCCCCCAGTTTCTCCATTTTAT451550.10040764324638468No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)