FastQCFastQC Report
Tue 4 Jun 2024
H57WGDRX5_n01_H04.Head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57WGDRX5_n01_H04.Head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45889086
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGATTATAAATGAATCCCTGTATACGTAATCTGCATTGAGATTCAATG1457980.317718247863991No Hit
GTGGTCTTATAGCACCAGCTCTGCATTTCTTGACATCAATTGCAGTTGTT1072170.233643790595437No Hit
GTTGATGAGAAGCATGGCTTATTTATGATACAATTTCGAATTCCAAATCA832440.1814026106338226No Hit
AGCTAATCTATTACTAATTTGCAAATATAGTTCACCACGATCCGCGGTGT662160.14429574823085384No Hit
GGCTTATTTATGATACAATTTCGAATTCCAAATCAAAACATAAAACTTCC655550.14285531858272357No Hit
TGGCAGTGGACCAGTGTCACATTTCTTAGGGATAGTACTAGGCTTATCAT641240.13973693004040222No Hit
CTCCTTTGTAATTGCCCCTAGATTGTATTCCATTCTTACTTTCTACATTA632770.13789117525679198No Hit
GTCTTATAGCACCAGCTCTGCATTTCTTGACATCAATTGCAGTTGTTGAC626330.13648779145437762No Hit
CGCAATTCTTAATTTTTATAGCTGTTGGCAGTGGACCAGTGTCACATTTC624680.13612822883419382No Hit
GTATAAAGTAATCTTTATTCTTTAAATAAGCCTTTGTTTCAATTAATGGC597100.13011808515863665No Hit
CTTTGTTTCAATTAATGGCACTTGATAAGATGATTTAAATATAACTTCAA565750.12328639537514431No Hit
CTGATGAGAAGCGTGTCTTATTTATTGTACAATTTTAAAAGTTAATCTAG564380.122987849442022No Hit
CCGTGATTATAAATGAATCCCTGTATACGTAATCTGCATTGAGATTCAAT537130.11704961829050159No Hit
GCAGTGTTTCCTGAGGTTCCTACGCAATTCTTAATTTTTATAGCTGTTGG522260.11380919637405723No Hit
CTTATTTATGATACAATTTCGAATTCCAAATCAAAACATAAAACTTCCTG497920.10850510293449732No Hit
CCGAAAATTCTGCACTTACATCATTATTTGGTGGAGGTGGTGGCAATCCA493980.10764651098084628No Hit
CAGTGGACCAGTGTCACATTTCTTAGGGATAGTACTAGGCTTATCATTAG490730.10693828157745396No Hit
CTAGATTGTATTCCATTCTTACTTTCTACATTACCGTGGCCTCTACTTCC488820.10652206060499875No Hit
CTAATCTATTACTAATTTGCAAATATAGTTCACCACGATCCGCGGTGTAC486530.10602303127153154No Hit
CCTGAGGTTCCTACGCAATTCTTAATTTTTATAGCTGTTGGCAGTGGACC470490.10252764676986593No Hit
GTGATTATAAATGAATCCCTGTATACGTAATCTGCATTGAGATTCAATGG462020.10068189198625573No Hit
ATAAAGTAATCTTTATTCTTTAAATAAGCCTTTGTTTCAATTAATGGCAC459530.10013927930488745No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)