FastQCFastQC Report
Tue 4 Jun 2024
H57WGDRX5_n01_H03.Head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57WGDRX5_n01_H03.Head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37103516
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGAGTTGGAATAACGACCTCCTTGAGAAAACGTGTCTGAGAAGCAAAA646440.17422607604087978No Hit
CGTGATTATAAATGAATCCCTGTATACGTAATCTGCATTGAGATTCAATG598630.16134050476510098No Hit
CACGGAAGTAATTCTTGAATATAGCATTGTTGGAGTAGACGTTTGAAAAT572320.15424953257799073No Hit
GGATGTTTGGCGTAAAGATGGATTGTCCTGAGGAAGTATCCAGGATTTTC531040.14312390232774705No Hit
CTGAGAAGCAAAAGGAAACCGTTGTGGTTTTGAGCGTAAGCCCATTTAAG503750.1357688042286882No Hit
GCGGACTTGACGAGTAATTGTAAGTAGGATTCTTGGAAGTAGCTGGAAAT474250.12781807524656155No Hit
GTGGTCTTATAGCACCAGCTCTGCATTTCTTGACATCAATTGCAGTTGTT420130.11323185651731765No Hit
CTCCGGACACTTTTGACTGTGATGATGTTTGTGAAACTGAACTGGTTTCG404010.10888725478199965No Hit
CCCAGTTGTTAGCAAAAATTATCTCTGATAACAGATAAACATCTATTCGC388740.10477174184786153No Hit
GTTGATGAGAAGCATGGCTTATTTATGATACAATTTCGAATTCCAAATCA380560.10256709903180064No Hit
CTCCTTTGTAATTGCCCCTAGATTGTATTCCATTCTTACTTTCTACATTA375150.10110901619134964No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)