FastQCFastQC Report
Tue 4 Jun 2024
H57WGDRX5_n01_H02.Head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57WGDRX5_n01_H02.Head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37254334
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAACAATTGGTGAGTAGGGTGGTAAGTAAGGTGGGAGTATAGATGGTG811150.2177330562398458No Hit
GAACAATTGGTGAGTAGGGTGGTAAGTAAGGTGGGAGTATAGATGGTGGA744240.19977272979836386No Hit
CTCGAGTTGGAATAACGACCTCCTTGAGAAAACGTGTCTGAGAAGCAAAA613160.1645875618122713No Hit
GGAACAATTGGTGAGTAGGGTGGTAAGTAAGGTGGGAGTATAGATGGTGG530850.14249348814019866No Hit
GTAAATTTTGGATAGCCTCAATTGGTTTTTGTAGGTACTGTCCATAATCT523190.14043735153069706No Hit
CACGGAAGTAATTCTTGAATATAGCATTGTTGGAGTAGACGTTTGAAAAT499700.13413204487832206No Hit
CTGAGAAGCAAAAGGAAACCGTTGTGGTTTTGAGCGTAAGCCCATTTAAG490700.13171621857473012No Hit
GGATGTTTGGCGTAAAGATGGATTGTCCTGAGGAAGTATCCAGGATTTTC486500.1305888329663872No Hit
CTCCTTTGTAATTGCCCCTAGATTGTATTCCATTCTTACTTTCTACATTA442000.11864391402084923No Hit
CCGAAAATTCTGCACTTACATCATTATTTGGTGGAGGTGGTGGCAATCCA386390.10371679171609939No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)