FastQCFastQC Report
Tue 4 Jun 2024
H57WGDRX5_n01_H01.Head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57WGDRX5_n01_H01.Head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45191995
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGATTATAAATGAATCCCTGTATACGTAATCTGCATTGAGATTCAATG729500.16142239350132695No Hit
CTGGTTTCTATAAAGCTAATTTTATCCTTAGTTTCAAACTCAATATTAAG600880.13296160083218278No Hit
GTGGTCTTATAGCACCAGCTCTGCATTTCTTGACATCAATTGCAGTTGTT557320.12332272562873138No Hit
GTTGATGAGAAGCATGGCTTATTTATGATACAATTTCGAATTCCAAATCA536280.11866703384083842No Hit
CTCGAGTTGGAATAACGACCTCCTTGAGAAAACGTGTCTGAGAAGCAAAA526820.11657374276130097No Hit
CTGATGAGAAGCGTGTCTTATTTATTGTACAATTTTAAAAGTTAATCTAG482640.10679767511923295No Hit
CGCAATTCTTAATTTTTATAGCTGTTGGCAGTGGACCAGTGTCACATTTC459420.10165959701491382No Hit
CGTCAAATGAATCCTTGTAGGTAAAAGTTTCTCCTGACTCCAATGGCAAT457270.10118384904229166No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)