FastQCFastQC Report
Tue 4 Jun 2024
H57WGDRX5_n01_C05.Head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57WGDRX5_n01_C05.Head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41856351
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGGAAGTAATTCTTGAATATAGCATTGTTGGAGTAGACGTTTGAAAAT535000.12781811773319657No Hit
CTCGAGTTGGAATAACGACCTCCTTGAGAAAACGTGTCTGAGAAGCAAAA504180.12045483850228608No Hit
CTCCGGACACTTTTGACTGTGATGATGTTTGTGAAACTGAACTGGTTTCG490120.11709573058578374No Hit
GGATGTTTGGCGTAAAGATGGATTGTCCTGAGGAAGTATCCAGGATTTTC486240.11616875059175606No Hit
GGCAGATCTGTGGAAGGAGTCCAGTTCACAAATAGACCTGAAGAACTGGT449320.10734810590631753No Hit
CTGAGAAGCAAAAGGAAACCGTTGTGGTTTTGAGCGTAAGCCCATTTAAG440710.10529107040410665No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)