FastQCFastQC Report
Tue 4 Jun 2024
H57WGDRX5_n01_C02.Head.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57WGDRX5_n01_C02.Head.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44971676
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAACAATTGGTGAGTAGGGTGGTAAGTAAGGTGGGAGAATAGATGGTG732060.16278245889701776No Hit
CTCGAGTTGGAATAACGACCTCCTTGAGAAAACGTGTCTGAGAAGCAAAA666410.14818438165391032No Hit
CACGGAAGTAATTCTTGAATATAGCATTGTTGGAGTAGACGTTTGAAAAT629490.13997476989739052No Hit
GAACAATTGGTGAGTAGGGTGGTAAGTAAGGTGGGAGAATAGATGGTGGA622350.13838710391847528No Hit
CTCCTTTGTAATTGCCCCTAGATTGTATTCCATTCTTACTTTCTACATTA609030.1354252396552888No Hit
GGATGTTTGGCGTAAAGATGGATTGTCCTGAGGAAGTATCCAGGATTTTC604510.13442016259300632No Hit
CTGAGAAGCAAAAGGAAACCGTTGTGGTTTTGAGCGTAAGCCCATTTAAG549540.12219691345281417No Hit
GTAAATTTTGGATAGCCTCAATTGGTTTTTGTAGGTACTGTCCATAATCT493140.10965568639247512No Hit
GGAACAATTGGTGAGTAGGGTGGTAAGTAAGGTGGGAGAATAGATGGTGG473020.1051817592922265No Hit
GCGGACTTGACGAGTAATTGTAAGTAGGATTCTTGGAAGTAGCTGGAAAT457630.1017596053124638No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)