FastQCFastQC Report
Tue 9 Nov 2021
H57H7AFX3_n01_10965chp_red1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH57H7AFX3_n01_10965chp_red1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7527403
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCGGGGGTGG165240.2195179399854106TruSeq Adapter, Index 8 (97% over 42bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCGGGGTTGG145900.19382514792950506TruSeq Adapter, Index 8 (97% over 42bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCGGGGTTTG92470.12284449231693853TruSeq Adapter, Index 8 (97% over 42bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCGGGGGTTG84350.11205723939584475TruSeq Adapter, Index 8 (97% over 42bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)