FastQCFastQC Report
Sat 30 Oct 2021
H572WAFX3_n01_9251chp4658.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH572WAFX3_n01_9251chp4658.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2310376
Sequences flagged as poor quality0
Sequence length151
%GC41

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCGGGGTT38540.1668126746468973TruSeq Adapter, Index 20 (97% over 45bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCGGGGGT26470.11457009594975018TruSeq Adapter, Index 20 (97% over 45bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)