[2023-05-29 14:25:34,411] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-05-29 14:25:34,411] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-05-29 14:25:34,411] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-05-29 14:25:34,413] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-05-29 14:25:34,413] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-05-29 14:25:34,413] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H55TVDSX7/merged [2023-05-29 14:25:34,603] multiqc [WARNING] MultiQC Version v1.14 now available! [2023-05-29 14:25:34,603] multiqc [INFO ] This is MultiQC v1.9 [2023-05-29 14:25:34,603] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H55TVDSX7/merged [2023-05-29 14:25:34,603] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H55TVDSX7/merged [2023-05-29 14:25:34,603] multiqc [INFO ] Template : default [2023-05-29 14:25:34,603] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-05-29 14:25:34,603] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H55TVDSX7/merged [2023-05-29 14:25:34,604] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-05-29 14:25:34,604] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-33975311/tmpgi5c_a19 [2023-05-29 14:25:34,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A09_fastqc.html [2023-05-29 14:25:34,731] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A09_fastqc.html [2023-05-29 14:25:34,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A45_fastqc.html [2023-05-29 14:25:34,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A45_fastqc.html [2023-05-29 14:25:34,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A06_fastqc.html [2023-05-29 14:25:34,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A06_fastqc.html [2023-05-29 14:25:34,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A18_fastqc.html [2023-05-29 14:25:34,916] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A18_fastqc.html [2023-05-29 14:25:34,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A46_fastqc.html [2023-05-29 14:25:34,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A46_fastqc.html [2023-05-29 14:25:35,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A43_fastqc.html [2023-05-29 14:25:35,030] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A43_fastqc.html [2023-05-29 14:25:35,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A23_fastqc.html [2023-05-29 14:25:35,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A23_fastqc.html [2023-05-29 14:25:35,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A19_fastqc.html [2023-05-29 14:25:35,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A19_fastqc.html [2023-05-29 14:25:35,213] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A44_fastqc.html [2023-05-29 14:25:35,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A44_fastqc.html [2023-05-29 14:25:35,284] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A08_fastqc.html [2023-05-29 14:25:35,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A08_fastqc.html [2023-05-29 14:25:35,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-05-29 14:25:35,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-05-29 14:25:35,329] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-05-29 14:25:35,329] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-05-29 14:25:35,329] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-05-29 14:25:35,329] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-05-29 14:25:35,329] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-05-29 14:25:35,356] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-05-29 14:25:36,478] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A31_fastqc.html [2023-05-29 14:25:36,480] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A31_fastqc.html [2023-05-29 14:25:36,538] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A35_fastqc.html [2023-05-29 14:25:36,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A35_fastqc.html [2023-05-29 14:25:36,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A17_fastqc.html [2023-05-29 14:25:36,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A17_fastqc.html [2023-05-29 14:25:36,669] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_gRNA_fastqc.html [2023-05-29 14:25:36,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_gRNA_fastqc.html [2023-05-29 14:25:36,755] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A02_fastqc.html [2023-05-29 14:25:36,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A02_fastqc.html [2023-05-29 14:25:36,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A11_fastqc.html [2023-05-29 14:25:36,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A11_fastqc.html [2023-05-29 14:25:36,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A02_fastqc.html [2023-05-29 14:25:36,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A02_fastqc.html [2023-05-29 14:25:36,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A14_fastqc.html [2023-05-29 14:25:36,952] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A14_fastqc.html [2023-05-29 14:25:37,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A14_fastqc.html [2023-05-29 14:25:37,012] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A14_fastqc.html [2023-05-29 14:25:37,079] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A33_fastqc.html [2023-05-29 14:25:37,081] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A33_fastqc.html [2023-05-29 14:25:37,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A37_fastqc.html [2023-05-29 14:25:37,149] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A37_fastqc.html [2023-05-29 14:25:37,214] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A18_fastqc.html [2023-05-29 14:25:37,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A18_fastqc.html [2023-05-29 14:25:37,277] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A16_fastqc.html [2023-05-29 14:25:37,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A16_fastqc.html [2023-05-29 14:25:37,337] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A32_fastqc.html [2023-05-29 14:25:37,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A32_fastqc.html [2023-05-29 14:25:37,405] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A13_fastqc.html [2023-05-29 14:25:37,407] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A13_fastqc.html [2023-05-29 14:25:37,471] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A48_fastqc.html [2023-05-29 14:25:37,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A48_fastqc.html [2023-05-29 14:25:37,546] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A36_fastqc.html [2023-05-29 14:25:37,548] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A36_fastqc.html [2023-05-29 14:25:37,604] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A12_fastqc.html [2023-05-29 14:25:37,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A12_fastqc.html [2023-05-29 14:25:37,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A23_fastqc.html [2023-05-29 14:25:37,663] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A23_fastqc.html [2023-05-29 14:25:37,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A36_fastqc.html [2023-05-29 14:25:37,720] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A36_fastqc.html [2023-05-29 14:25:37,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A22_fastqc.html [2023-05-29 14:25:37,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A22_fastqc.html [2023-05-29 14:25:37,851] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A33_fastqc.html [2023-05-29 14:25:37,853] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A33_fastqc.html [2023-05-29 14:25:37,910] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A42_fastqc.html [2023-05-29 14:25:37,911] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A42_fastqc.html [2023-05-29 14:25:37,972] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_undetermined_fastqc.html [2023-05-29 14:25:37,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_undetermined_fastqc.html [2023-05-29 14:25:38,023] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A24_fastqc.html [2023-05-29 14:25:38,025] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A24_fastqc.html [2023-05-29 14:25:38,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A43_fastqc.html [2023-05-29 14:25:38,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A43_fastqc.html [2023-05-29 14:25:38,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A27_fastqc.html [2023-05-29 14:25:38,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A27_fastqc.html [2023-05-29 14:25:38,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A35_fastqc.html [2023-05-29 14:25:38,204] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A35_fastqc.html [2023-05-29 14:25:38,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A32_fastqc.html [2023-05-29 14:25:38,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A32_fastqc.html [2023-05-29 14:25:38,330] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A38_fastqc.html [2023-05-29 14:25:38,332] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A38_fastqc.html [2023-05-29 14:25:38,401] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A48_fastqc.html [2023-05-29 14:25:38,402] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A48_fastqc.html [2023-05-29 14:25:38,469] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A39_fastqc.html [2023-05-29 14:25:38,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A39_fastqc.html [2023-05-29 14:25:38,523] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A27_fastqc.html [2023-05-29 14:25:38,525] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A27_fastqc.html [2023-05-29 14:25:38,582] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A28_fastqc.html [2023-05-29 14:25:38,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A28_fastqc.html [2023-05-29 14:25:38,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A08_fastqc.html [2023-05-29 14:25:38,643] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A08_fastqc.html [2023-05-29 14:25:38,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A17_fastqc.html [2023-05-29 14:25:38,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A17_fastqc.html [2023-05-29 14:25:38,766] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A40_fastqc.html [2023-05-29 14:25:38,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A40_fastqc.html [2023-05-29 14:25:38,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A06_fastqc.html [2023-05-29 14:25:38,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A06_fastqc.html [2023-05-29 14:25:38,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A01_fastqc.html [2023-05-29 14:25:38,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A01_fastqc.html [2023-05-29 14:25:38,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A25_fastqc.html [2023-05-29 14:25:38,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A25_fastqc.html [2023-05-29 14:25:39,020] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A41_fastqc.html [2023-05-29 14:25:39,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A41_fastqc.html [2023-05-29 14:25:39,083] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A30_fastqc.html [2023-05-29 14:25:39,085] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A30_fastqc.html [2023-05-29 14:25:39,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A12_fastqc.html [2023-05-29 14:25:39,141] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A12_fastqc.html [2023-05-29 14:25:39,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A09_fastqc.html [2023-05-29 14:25:39,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A09_fastqc.html [2023-05-29 14:25:39,305] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A13_fastqc.html [2023-05-29 14:25:39,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A13_fastqc.html [2023-05-29 14:25:39,362] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_mRNA_fastqc.html [2023-05-29 14:25:39,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_mRNA_fastqc.html [2023-05-29 14:25:39,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A15_fastqc.html [2023-05-29 14:25:39,419] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A15_fastqc.html [2023-05-29 14:25:39,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A07_fastqc.html [2023-05-29 14:25:39,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A07_fastqc.html [2023-05-29 14:25:39,532] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A05_fastqc.html [2023-05-29 14:25:39,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A05_fastqc.html [2023-05-29 14:25:39,587] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_gRNA_fastqc.html [2023-05-29 14:25:39,588] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_gRNA_fastqc.html [2023-05-29 14:25:39,692] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A25_fastqc.html [2023-05-29 14:25:39,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A25_fastqc.html [2023-05-29 14:25:39,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A39_fastqc.html [2023-05-29 14:25:39,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A39_fastqc.html [2023-05-29 14:25:39,810] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A28_fastqc.html [2023-05-29 14:25:39,812] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A28_fastqc.html [2023-05-29 14:25:39,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_mRNA_fastqc.html [2023-05-29 14:25:39,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_mRNA_fastqc.html [2023-05-29 14:25:39,966] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A29_fastqc.html [2023-05-29 14:25:39,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A29_fastqc.html [2023-05-29 14:25:40,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A22_fastqc.html [2023-05-29 14:25:40,043] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A22_fastqc.html [2023-05-29 14:25:40,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A15_fastqc.html [2023-05-29 14:25:40,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A15_fastqc.html [2023-05-29 14:25:40,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A07_fastqc.html [2023-05-29 14:25:40,165] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A07_fastqc.html [2023-05-29 14:25:40,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A44_fastqc.html [2023-05-29 14:25:40,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A44_fastqc.html [2023-05-29 14:25:40,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A20_fastqc.html [2023-05-29 14:25:40,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A20_fastqc.html [2023-05-29 14:25:40,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A19_fastqc.html [2023-05-29 14:25:40,341] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A19_fastqc.html [2023-05-29 14:25:40,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A21_fastqc.html [2023-05-29 14:25:40,401] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A21_fastqc.html [2023-05-29 14:25:40,459] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A26_fastqc.html [2023-05-29 14:25:40,461] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A26_fastqc.html [2023-05-29 14:25:40,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A47_fastqc.html [2023-05-29 14:25:40,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A47_fastqc.html [2023-05-29 14:25:40,594] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A46_fastqc.html [2023-05-29 14:25:40,596] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A46_fastqc.html [2023-05-29 14:25:40,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A42_fastqc.html [2023-05-29 14:25:40,678] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A42_fastqc.html [2023-05-29 14:25:40,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A10_fastqc.html [2023-05-29 14:25:40,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A10_fastqc.html [2023-05-29 14:25:40,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A01_fastqc.html [2023-05-29 14:25:40,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A01_fastqc.html [2023-05-29 14:25:40,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A05_fastqc.html [2023-05-29 14:25:40,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A05_fastqc.html [2023-05-29 14:25:40,926] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A24_fastqc.html [2023-05-29 14:25:40,928] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A24_fastqc.html [2023-05-29 14:25:41,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A29_fastqc.html [2023-05-29 14:25:41,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A29_fastqc.html [2023-05-29 14:25:41,064] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A21_fastqc.html [2023-05-29 14:25:41,066] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A21_fastqc.html [2023-05-29 14:25:41,121] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A47_fastqc.html [2023-05-29 14:25:41,123] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A47_fastqc.html [2023-05-29 14:25:41,193] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A16_fastqc.html [2023-05-29 14:25:41,195] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A16_fastqc.html [2023-05-29 14:25:41,253] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A37_fastqc.html [2023-05-29 14:25:41,255] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A37_fastqc.html [2023-05-29 14:25:41,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A34_fastqc.html [2023-05-29 14:25:41,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A34_fastqc.html [2023-05-29 14:25:41,387] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A11_fastqc.html [2023-05-29 14:25:41,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A11_fastqc.html [2023-05-29 14:25:41,441] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A26_fastqc.html [2023-05-29 14:25:41,443] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A26_fastqc.html [2023-05-29 14:25:41,502] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A04_fastqc.html [2023-05-29 14:25:41,504] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A04_fastqc.html [2023-05-29 14:25:41,569] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A31_fastqc.html [2023-05-29 14:25:41,570] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A31_fastqc.html [2023-05-29 14:25:41,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A34_fastqc.html [2023-05-29 14:25:41,629] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A34_fastqc.html [2023-05-29 14:25:41,684] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A38_fastqc.html [2023-05-29 14:25:41,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A38_fastqc.html [2023-05-29 14:25:41,744] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A03_fastqc.html [2023-05-29 14:25:41,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A03_fastqc.html [2023-05-29 14:25:41,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A03_fastqc.html [2023-05-29 14:25:41,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A03_fastqc.html [2023-05-29 14:25:41,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_undetermined_fastqc.html [2023-05-29 14:25:41,893] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_undetermined_fastqc.html [2023-05-29 14:25:41,948] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A04_fastqc.html [2023-05-29 14:25:41,950] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A04_fastqc.html [2023-05-29 14:25:42,005] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A30_fastqc.html [2023-05-29 14:25:42,007] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A30_fastqc.html [2023-05-29 14:25:42,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A40_fastqc.html [2023-05-29 14:25:42,074] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A40_fastqc.html [2023-05-29 14:25:42,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A20_fastqc.html [2023-05-29 14:25:42,140] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A20_fastqc.html [2023-05-29 14:25:42,198] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A10_fastqc.html [2023-05-29 14:25:42,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A10_fastqc.html [2023-05-29 14:25:42,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n02_A45_fastqc.html [2023-05-29 14:25:42,260] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n02_A45_fastqc.html [2023-05-29 14:25:42,317] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H55TVDSX7_n01_A41_fastqc.html [2023-05-29 14:25:42,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H55TVDSX7_n01_A41_fastqc.html [2023-05-29 14:25:43,189] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-05-29 14:25:43,190] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-05-29 14:25:43,220] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 51 samples (table) [2023-05-29 14:25:43,230] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-05-29 14:25:43,232] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-05-29 14:25:43,237] multiqc [DEBUG ] No samples found: conpair [2023-05-29 14:25:43,241] multiqc [DEBUG ] No samples found: peddy [2023-05-29 14:25:43,245] multiqc [DEBUG ] No samples found: somalier [2023-05-29 14:25:43,250] multiqc [DEBUG ] No samples found: methylQA [2023-05-29 14:25:43,257] multiqc [DEBUG ] No samples found: mosdepth [2023-05-29 14:25:43,261] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-05-29 14:25:43,264] multiqc [DEBUG ] No samples found: qualimap [2023-05-29 14:25:43,268] multiqc [DEBUG ] No samples found: preseq [2023-05-29 14:25:43,273] multiqc [DEBUG ] No samples found: quast [2023-05-29 14:25:43,277] multiqc [DEBUG ] No samples found: qorts [2023-05-29 14:25:43,282] multiqc [DEBUG ] No samples found: rna_seqc [2023-05-29 14:25:43,286] multiqc [DEBUG ] No samples found: rockhopper [2023-05-29 14:25:43,290] multiqc [DEBUG ] No samples found: rsem [2023-05-29 14:25:43,301] multiqc [DEBUG ] No samples found: rseqc [2023-05-29 14:25:43,305] multiqc [DEBUG ] No samples found: busco [2023-05-29 14:25:43,309] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-05-29 14:25:43,313] multiqc [DEBUG ] No samples found: disambiguate [2023-05-29 14:25:43,318] multiqc [DEBUG ] No samples found: supernova [2023-05-29 14:25:43,329] multiqc [DEBUG ] No samples found: deeptools [2023-05-29 14:25:43,333] multiqc [DEBUG ] No samples found: sargasso [2023-05-29 14:25:43,338] multiqc [DEBUG ] No samples found: verifybamid [2023-05-29 14:25:43,342] multiqc [DEBUG ] No samples found: mirtrace [2023-05-29 14:25:43,347] multiqc [DEBUG ] No samples found: happy [2023-05-29 14:25:43,351] multiqc [DEBUG ] No samples found: mirtop [2023-05-29 14:25:43,356] multiqc [DEBUG ] No samples found: homer [2023-05-29 14:25:43,360] multiqc [DEBUG ] No samples found: macs2 [2023-05-29 14:25:43,365] multiqc [DEBUG ] No samples found: theta2 [2023-05-29 14:25:43,369] multiqc [DEBUG ] No samples found: snpeff [2023-05-29 14:25:43,375] multiqc [DEBUG ] No samples found: gatk [2023-05-29 14:25:43,379] multiqc [DEBUG ] No samples found: htseq [2023-05-29 14:25:43,384] multiqc [DEBUG ] No samples found: bcftools [2023-05-29 14:25:43,388] multiqc [DEBUG ] No samples found: featureCounts [2023-05-29 14:25:43,394] multiqc [DEBUG ] No samples found: fgbio [2023-05-29 14:25:43,405] multiqc [DEBUG ] No samples found: dragen [2023-05-29 14:25:43,409] multiqc [DEBUG ] No samples found: dedup [2023-05-29 14:25:43,413] multiqc [DEBUG ] No samples found: damageprofiler [2023-05-29 14:25:43,433] multiqc [DEBUG ] No samples found: biobambam2 [2023-05-29 14:25:43,437] multiqc [DEBUG ] No samples found: mtnucratio [2023-05-29 14:25:43,439] multiqc [DEBUG ] No samples found: picard [2023-05-29 14:25:43,443] multiqc [DEBUG ] No samples found: prokka [2023-05-29 14:25:43,447] multiqc [DEBUG ] No samples found: samblaster [2023-05-29 14:25:43,455] multiqc [DEBUG ] No samples found: samtools [2023-05-29 14:25:43,460] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-05-29 14:25:43,464] multiqc [DEBUG ] No samples found: bamtools [2023-05-29 14:25:43,468] multiqc [DEBUG ] No samples found: jellyfish [2023-05-29 14:25:43,475] multiqc [DEBUG ] No samples found: vcftools [2023-05-29 14:25:43,479] multiqc [DEBUG ] No samples found: longranger [2023-05-29 14:25:43,483] multiqc [DEBUG ] No samples found: stacks [2023-05-29 14:25:43,487] multiqc [DEBUG ] No samples found: varscan2 [2023-05-29 14:25:43,499] multiqc [DEBUG ] No samples found: bbmap [2023-05-29 14:25:43,504] multiqc [DEBUG ] No samples found: bismark [2023-05-29 14:25:43,508] multiqc [DEBUG ] No samples found: biscuit [2023-05-29 14:25:43,512] multiqc [DEBUG ] No samples found: hicexplorer [2023-05-29 14:25:43,516] multiqc [DEBUG ] No samples found: hicup [2023-05-29 14:25:43,521] multiqc [DEBUG ] No samples found: hicpro [2023-05-29 14:25:43,525] multiqc [DEBUG ] No samples found: salmon [2023-05-29 14:25:43,529] multiqc [DEBUG ] No samples found: kallisto [2023-05-29 14:25:43,533] multiqc [DEBUG ] No samples found: slamdunk [2023-05-29 14:25:43,537] multiqc [DEBUG ] No samples found: star [2023-05-29 14:25:43,543] multiqc [DEBUG ] No samples found: hisat2 [2023-05-29 14:25:43,547] multiqc [DEBUG ] No samples found: tophat [2023-05-29 14:25:43,551] multiqc [DEBUG ] No samples found: bowtie2 [2023-05-29 14:25:43,555] multiqc [DEBUG ] No samples found: bowtie1 [2023-05-29 14:25:43,559] multiqc [DEBUG ] No samples found: snpsplit [2023-05-29 14:25:43,563] multiqc [DEBUG ] No samples found: kat [2023-05-29 14:25:43,567] multiqc [DEBUG ] No samples found: leehom [2023-05-29 14:25:43,573] multiqc [DEBUG ] No samples found: adapterRemoval [2023-05-29 14:25:43,577] multiqc [DEBUG ] No samples found: clipandmerge [2023-05-29 14:25:43,581] multiqc [DEBUG ] No samples found: cutadapt [2023-05-29 14:25:43,585] multiqc [DEBUG ] No samples found: flexbar [2023-05-29 14:25:43,590] multiqc [DEBUG ] No samples found: kaiju [2023-05-29 14:25:43,594] multiqc [DEBUG ] No samples found: kraken [2023-05-29 14:25:43,598] multiqc [DEBUG ] No samples found: malt [2023-05-29 14:25:43,603] multiqc [DEBUG ] No samples found: trimmomatic [2023-05-29 14:25:43,607] multiqc [DEBUG ] No samples found: sickle [2023-05-29 14:25:43,611] multiqc [DEBUG ] No samples found: skewer [2023-05-29 14:25:43,615] multiqc [DEBUG ] No samples found: sortmerna [2023-05-29 14:25:43,619] multiqc [DEBUG ] No samples found: biobloomtools [2023-05-29 14:25:43,623] multiqc [DEBUG ] No samples found: fastq_screen [2023-05-29 14:25:43,627] multiqc [DEBUG ] No samples found: afterqc [2023-05-29 14:25:43,632] multiqc [DEBUG ] No samples found: fastp [2023-05-29 14:26:05,054] multiqc.modules.fastqc.fastqc [INFO ] Found 102 reports [2023-05-29 14:26:20,623] multiqc [DEBUG ] No samples found: pycoqc [2023-05-29 14:26:20,627] multiqc [DEBUG ] No samples found: minionqc [2023-05-29 14:26:20,631] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-05-29 14:26:20,636] multiqc [DEBUG ] No samples found: clusterflow [2023-05-29 14:26:20,640] multiqc [DEBUG ] No samples found: bcl2fastq [2023-05-29 14:26:20,644] multiqc [DEBUG ] No samples found: interop [2023-05-29 14:26:20,649] multiqc [DEBUG ] No samples found: ivar [2023-05-29 14:26:20,653] multiqc [DEBUG ] No samples found: flash [2023-05-29 14:26:20,657] multiqc [DEBUG ] No samples found: seqyclean [2023-05-29 14:26:20,657] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-05-29 14:26:20,657] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-05-29 14:26:20,657] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-05-29 14:26:20,657] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-05-29 14:26:20,657] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-05-29 14:26:20,657] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-05-29 14:26:20,657] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-05-29 14:26:20,658] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-05-29 14:26:20,773] multiqc [INFO ] Compressing plot data [2023-05-29 14:26:20,808] multiqc [INFO ] Report : multiqc_report.html [2023-05-29 14:26:20,809] multiqc [INFO ] Data : multiqc_data [2023-05-29 14:26:20,809] multiqc [DEBUG ] Moving data file from '/state/partition1/job-33975311/tmpgi5c_a19/multiqc_data' to '/scratch/gencore/logs/html/H55TVDSX7/merged/multiqc_data' [2023-05-29 14:26:20,947] multiqc [INFO ] MultiQC complete