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MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

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About MultiQC

This report was generated using MultiQC, version 1.0.dev0

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MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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Report generated on 2018-09-12, 18:09 based on data in: /mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/H55FTAFXY/merged

General Statistics

Showing ¹⁹²/₁₉₂ rows and ³/₅ columns.

Sample Name	% Dups	% GC	Length	% Failed	M Seqs
H55FTAFXY_n01_p6a10	53.9%	49%	151 bp	25%	0.9
H55FTAFXY_n01_p6a11	56.8%	49%	151 bp	25%	1.1
H55FTAFXY_n01_p6a12	41.1%	48%	151 bp	25%	0.4
H55FTAFXY_n01_p6a2	62.7%	49%	151 bp	25%	1.8
H55FTAFXY_n01_p6a3	43.5%	48%	151 bp	17%	0.4
H55FTAFXY_n01_p6a4	78.9%	55%	151 bp	33%	0.6
H55FTAFXY_n01_p6a5	74.7%	53%	151 bp	17%	0.5
H55FTAFXY_n01_p6a6	63.4%	49%	151 bp	33%	1.5
H55FTAFXY_n01_p6a7	45.9%	50%	151 bp	25%	0.5
H55FTAFXY_n01_p6a8	55.1%	52%	151 bp	25%	0.3
H55FTAFXY_n01_p6a9	51.0%	48%	151 bp	25%	0.8
H55FTAFXY_n01_p6b1	44.8%	48%	151 bp	17%	0.6
H55FTAFXY_n01_p6b10	41.4%	48%	151 bp	25%	0.5
H55FTAFXY_n01_p6b11	46.9%	48%	151 bp	25%	0.8
H55FTAFXY_n01_p6b12	19.6%	53%	151 bp	25%	0.1
H55FTAFXY_n01_p6b2	48.3%	47%	151 bp	17%	0.9
H55FTAFXY_n01_p6b3	48.4%	48%	151 bp	17%	1.0
H55FTAFXY_n01_p6b4	69.0%	51%	151 bp	25%	0.9
H55FTAFXY_n01_p6b5	53.1%	48%	151 bp	33%	2.0
H55FTAFXY_n01_p6b6	41.4%	51%	151 bp	25%	0.1
H55FTAFXY_n01_p6b7	47.6%	48%	151 bp	17%	0.6
H55FTAFXY_n01_p6b8	55.0%	49%	151 bp	33%	0.6
H55FTAFXY_n01_p6b9	40.0%	49%	151 bp	25%	0.3
H55FTAFXY_n01_p6c1	45.5%	48%	151 bp	17%	0.6
H55FTAFXY_n01_p6c10	47.6%	48%	151 bp	25%	0.8
H55FTAFXY_n01_p6c11	29.1%	53%	151 bp	25%	0.1
H55FTAFXY_n01_p6c12	42.6%	49%	151 bp	25%	0.2
H55FTAFXY_n01_p6c2	50.9%	48%	151 bp	25%	1.1
H55FTAFXY_n01_p6c3	52.9%	48%	151 bp	25%	1.0
H55FTAFXY_n01_p6c4	28.8%	55%	151 bp	25%	0.1
H55FTAFXY_n01_p6c5	60.9%	48%	151 bp	25%	1.6
H55FTAFXY_n01_p6c6	49.6%	50%	151 bp	8%	0.2
H55FTAFXY_n01_p6c7	29.7%	54%	151 bp	25%	0.1
H55FTAFXY_n01_p6c8	30.8%	45%	151 bp	25%	0.4
H55FTAFXY_n01_p6c9	65.6%	51%	151 bp	33%	0.4
H55FTAFXY_n01_p6d1	47.4%	48%	151 bp	25%	0.8
H55FTAFXY_n01_p6d10	37.9%	54%	151 bp	33%	0.3
H55FTAFXY_n01_p6d11	42.9%	54%	151 bp	25%	0.4
H55FTAFXY_n01_p6d12	74.9%	52%	151 bp	33%	1.3
H55FTAFXY_n01_p6d2	63.4%	50%	151 bp	33%	1.7
H55FTAFXY_n01_p6d3	53.5%	49%	151 bp	33%	1.2
H55FTAFXY_n01_p6d4	26.9%	53%	151 bp	33%	0.1
H55FTAFXY_n01_p6d5	49.7%	48%	151 bp	25%	0.8
H55FTAFXY_n01_p6d6	37.0%	51%	151 bp	33%	0.2
H55FTAFXY_n01_p6d7	70.3%	50%	151 bp	33%	2.1
H55FTAFXY_n01_p6d8	45.7%	53%	151 bp	33%	0.4
H55FTAFXY_n01_p6d9	84.4%	55%	151 bp	42%	2.0
H55FTAFXY_n01_p6e1	50.0%	52%	151 bp	25%	0.3
H55FTAFXY_n01_p6e10	60.7%	49%	151 bp	33%	2.3
H55FTAFXY_n01_p6e11	42.2%	55%	151 bp	33%	0.4
H55FTAFXY_n01_p6e12	63.4%	53%	151 bp	25%	0.6
H55FTAFXY_n01_p6e2	43.6%	52%	151 bp	25%	0.3
H55FTAFXY_n01_p6e3	57.7%	49%	151 bp	33%	1.8
H55FTAFXY_n01_p6e4	37.5%	48%	151 bp	25%	0.4
H55FTAFXY_n01_p6e5	69.2%	51%	151 bp	33%	0.9
H55FTAFXY_n01_p6e6	31.0%	50%	151 bp	33%	0.2
H55FTAFXY_n01_p6e7	61.5%	54%	151 bp	33%	0.5
H55FTAFXY_n01_p6e8	42.3%	54%	151 bp	25%	0.2
H55FTAFXY_n01_p6e9	47.4%	52%	151 bp	25%	0.6
H55FTAFXY_n01_p6f1	33.4%	50%	151 bp	25%	0.2
H55FTAFXY_n01_p6f10	50.8%	49%	151 bp	33%	1.0
H55FTAFXY_n01_p6f11	49.0%	49%	151 bp	25%	0.7
H55FTAFXY_n01_p6f12	44.7%	54%	151 bp	25%	0.3
H55FTAFXY_n01_p6f2	52.5%	48%	151 bp	33%	1.5
H55FTAFXY_n01_p6f3	75.2%	53%	151 bp	25%	0.6
H55FTAFXY_n01_p6f4	50.9%	48%	151 bp	33%	1.6
H55FTAFXY_n01_p6f5	48.1%	48%	151 bp	25%	0.8
H55FTAFXY_n01_p6f6	59.8%	48%	151 bp	33%	2.3
H55FTAFXY_n01_p6f7	74.8%	53%	151 bp	25%	0.7
H55FTAFXY_n01_p6f8	73.0%	52%	151 bp	33%	1.4
H55FTAFXY_n01_p6f9	69.5%	50%	151 bp	33%	2.7
H55FTAFXY_n01_p6g1	50.9%	49%	151 bp	33%	1.3
H55FTAFXY_n01_p6g10	50.9%	54%	151 bp	25%	0.3
H55FTAFXY_n01_p6g11	62.9%	49%	151 bp	33%	2.8
H55FTAFXY_n01_p6g12	38.8%	53%	151 bp	25%	0.4
H55FTAFXY_n01_p6g2	34.5%	52%	151 bp	25%	0.3
H55FTAFXY_n01_p6g3	56.1%	49%	151 bp	33%	2.1
H55FTAFXY_n01_p6g4	49.7%	54%	151 bp	33%	0.2
H55FTAFXY_n01_p6g5	53.6%	52%	151 bp	33%	0.4
H55FTAFXY_n01_p6g6	67.7%	51%	151 bp	33%	0.7
H55FTAFXY_n01_p6g7	50.9%	49%	151 bp	33%	1.4
H55FTAFXY_n01_p6g8	55.4%	48%	151 bp	33%	2.6
H55FTAFXY_n01_p6g9	63.9%	49%	151 bp	33%	2.5
H55FTAFXY_n01_p6h1	56.8%	49%	151 bp	33%	1.3
H55FTAFXY_n01_p6h10	62.9%	49%	151 bp	33%	2.8
H55FTAFXY_n01_p6h11	61.4%	50%	151 bp	33%	2.2
H55FTAFXY_n01_p6h12	56.4%	53%	151 bp	33%	0.9
H55FTAFXY_n01_p6h2	70.3%	50%	151 bp	33%	1.4
H55FTAFXY_n01_p6h3	52.0%	49%	151 bp	33%	1.0
H55FTAFXY_n01_p6h4	59.8%	50%	151 bp	33%	2.0
H55FTAFXY_n01_p6h5	33.3%	53%	151 bp	33%	0.2
H55FTAFXY_n01_p6h6	72.1%	51%	151 bp	33%	1.4
H55FTAFXY_n01_p6h7	58.7%	49%	151 bp	33%	2.1
H55FTAFXY_n01_p6h8	82.7%	56%	151 bp	42%	1.1
H55FTAFXY_n01_p6h9	60.5%	49%	151 bp	33%	3.3
H55FTAFXY_n01_p7a10	58.7%	48%	151 bp	25%	1.6
H55FTAFXY_n01_p7a11	22.7%	52%	151 bp	25%	0.1
H55FTAFXY_n01_p7a12	55.3%	54%	151 bp	42%	0.5
H55FTAFXY_n01_p7a2	52.8%	50%	151 bp	42%	0.8
H55FTAFXY_n01_p7a3	28.8%	50%	151 bp	33%	0.2
H55FTAFXY_n01_p7a4	36.8%	55%	151 bp	33%	0.2
H55FTAFXY_n01_p7a5	65.0%	49%	151 bp	33%	1.0
H55FTAFXY_n01_p7a6	60.4%	49%	151 bp	25%	1.4
H55FTAFXY_n01_p7a7	44.5%	50%	151 bp	33%	0.3
H55FTAFXY_n01_p7a8	65.1%	53%	151 bp	42%	1.2
H55FTAFXY_n01_p7a9	46.7%	55%	151 bp	33%	0.4
H55FTAFXY_n01_p7b1	44.2%	52%	151 bp	33%	0.4
H55FTAFXY_n01_p7b10	49.9%	49%	151 bp	17%	0.5
H55FTAFXY_n01_p7b11	49.1%	54%	151 bp	33%	0.4
H55FTAFXY_n01_p7b12	61.6%	49%	151 bp	33%	1.6
H55FTAFXY_n01_p7b2	38.1%	54%	151 bp	25%	0.3
H55FTAFXY_n01_p7b3	52.5%	48%	151 bp	33%	1.4
H55FTAFXY_n01_p7b4	50.4%	48%	151 bp	25%	0.8
H55FTAFXY_n01_p7b5	42.7%	51%	151 bp	33%	0.6
H55FTAFXY_n01_p7b6	49.7%	47%	151 bp	25%	1.0
H55FTAFXY_n01_p7b7	48.5%	47%	151 bp	17%	1.0
H55FTAFXY_n01_p7b8	49.3%	49%	151 bp	17%	0.5
H55FTAFXY_n01_p7b9	27.2%	53%	151 bp	25%	0.2
H55FTAFXY_n01_p7c1	63.9%	50%	151 bp	25%	1.2
H55FTAFXY_n01_p7c10	38.1%	55%	151 bp	25%	0.2
H55FTAFXY_n01_p7c11	51.6%	49%	151 bp	25%	0.8
H55FTAFXY_n01_p7c12	41.1%	53%	151 bp	25%	0.3
H55FTAFXY_n01_p7c2	44.3%	53%	151 bp	25%	0.4
H55FTAFXY_n01_p7c3	32.8%	52%	151 bp	25%	0.2
H55FTAFXY_n01_p7c4	49.1%	48%	151 bp	25%	0.7
H55FTAFXY_n01_p7c5	45.2%	48%	151 bp	25%	0.6
H55FTAFXY_n01_p7c6	71.5%	52%	151 bp	33%	1.1
H55FTAFXY_n01_p7c7	57.7%	50%	151 bp	33%	1.0
H55FTAFXY_n01_p7c8	45.8%	48%	151 bp	8%	0.4
H55FTAFXY_n01_p7c9	56.7%	49%	151 bp	33%	1.4
H55FTAFXY_n01_p7d1	24.4%	54%	151 bp	25%	0.1
H55FTAFXY_n01_p7d10	27.2%	55%	151 bp	25%	0.1
H55FTAFXY_n01_p7d11	50.1%	54%	151 bp	33%	0.4
H55FTAFXY_n01_p7d12	22.1%	51%	151 bp	33%	0.1
H55FTAFXY_n01_p7d2	51.6%	49%	151 bp	25%	0.8
H55FTAFXY_n01_p7d3	27.7%	54%	151 bp	25%	0.1
H55FTAFXY_n01_p7d4	60.7%	50%	151 bp	25%	1.2
H55FTAFXY_n01_p7d5	47.0%	48%	151 bp	25%	0.8
H55FTAFXY_n01_p7d6	39.8%	54%	151 bp	25%	0.1
H55FTAFXY_n01_p7d7	61.0%	52%	151 bp	33%	0.3
H55FTAFXY_n01_p7d8	30.3%	52%	151 bp	25%	0.2
H55FTAFXY_n01_p7d9	27.5%	55%	151 bp	25%	0.2
H55FTAFXY_n01_p7e1	50.6%	56%	151 bp	42%	0.5
H55FTAFXY_n01_p7e10	61.8%	54%	151 bp	33%	0.6
H55FTAFXY_n01_p7e11	44.4%	53%	151 bp	33%	0.3
H55FTAFXY_n01_p7e12	67.3%	51%	151 bp	33%	0.9
H55FTAFXY_n01_p7e2	42.2%	51%	151 bp	25%	0.4
H55FTAFXY_n01_p7e3	42.6%	54%	151 bp	25%	0.4
H55FTAFXY_n01_p7e4	58.4%	52%	151 bp	17%	0.6
H55FTAFXY_n01_p7e5	52.8%	49%	151 bp	33%	0.9
H55FTAFXY_n01_p7e6	50.4%	48%	151 bp	33%	1.0
H55FTAFXY_n01_p7e7	54.0%	50%	151 bp	33%	0.6
H55FTAFXY_n01_p7e8	53.1%	55%	151 bp	42%	0.4
H55FTAFXY_n01_p7e9	84.9%	54%	151 bp	42%	3.8
H55FTAFXY_n01_p7f1	50.5%	48%	151 bp	25%	0.7
H55FTAFXY_n01_p7f10	46.9%	48%	151 bp	17%	0.8
H55FTAFXY_n01_p7f11	41.0%	48%	151 bp	33%	0.5
H55FTAFXY_n01_p7f12	31.0%	51%	151 bp	33%	0.1
H55FTAFXY_n01_p7f2	51.4%	47%	151 bp	25%	1.3
H55FTAFXY_n01_p7f3	35.3%	52%	151 bp	33%	0.2
H55FTAFXY_n01_p7f4	67.1%	50%	151 bp	25%	0.9
H55FTAFXY_n01_p7f5	70.3%	51%	151 bp	33%	1.7
H55FTAFXY_n01_p7f6	34.4%	53%	151 bp	33%	0.2
H55FTAFXY_n01_p7f7	61.5%	48%	151 bp	25%	2.1
H55FTAFXY_n01_p7f8	35.1%	54%	151 bp	33%	0.2
H55FTAFXY_n01_p7f9	35.0%	54%	151 bp	33%	0.2
H55FTAFXY_n01_p7g1	49.4%	49%	151 bp	25%	0.6
H55FTAFXY_n01_p7g10	29.8%	53%	151 bp	33%	0.2
H55FTAFXY_n01_p7g11	44.7%	52%	151 bp	25%	0.4
H55FTAFXY_n01_p7g12	56.1%	49%	151 bp	25%	1.2
H55FTAFXY_n01_p7g2	54.7%	48%	151 bp	33%	1.2
H55FTAFXY_n01_p7g3	41.3%	53%	151 bp	25%	0.3
H55FTAFXY_n01_p7g4	42.1%	54%	151 bp	25%	0.2
H55FTAFXY_n01_p7g5	51.0%	54%	151 bp	33%	0.4
H55FTAFXY_n01_p7g6	24.0%	51%	151 bp	33%	0.1
H55FTAFXY_n01_p7g7	59.4%	49%	151 bp	33%	1.4
H55FTAFXY_n01_p7g8	58.0%	52%	151 bp	42%	1.0
H55FTAFXY_n01_p7g9	36.4%	53%	151 bp	25%	0.3
H55FTAFXY_n01_p7h1	27.6%	54%	151 bp	42%	0.1
H55FTAFXY_n01_p7h10	43.7%	50%	151 bp	33%	0.7
H55FTAFXY_n01_p7h11	52.6%	51%	151 bp	42%	0.4
H55FTAFXY_n01_p7h12	47.1%	46%	151 bp	33%	1.6
H55FTAFXY_n01_p7h2	55.6%	52%	151 bp	33%	0.4
H55FTAFXY_n01_p7h3	27.4%	54%	151 bp	42%	0.1
H55FTAFXY_n01_p7h4	34.0%	54%	151 bp	33%	0.2
H55FTAFXY_n01_p7h5	37.5%	54%	151 bp	33%	0.2
H55FTAFXY_n01_p7h6	40.5%	55%	151 bp	42%	0.2
H55FTAFXY_n01_p7h7	34.9%	54%	151 bp	33%	0.2
H55FTAFXY_n01_p7h8	35.3%	49%	151 bp	17%	0.4
H55FTAFXY_n01_p7h9	48.6%	53%	151 bp	25%	0.3
H55FTAFXY_n01_time1p7a1	9.2%	61%	151 bp	33%	0.0
H55FTAFXY_n01_time2p6a1	54.1%	49%	151 bp	25%	0.5

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	FastQC	% Dups	% Duplicate Reads	`percent_duplicates`	None
\|\|	FastQC	% GC	Average % GC Content	`percent_gc`	None
\|\|	FastQC	Length	Average Sequence Length (bp)	`avg_sequence_length`	None
\|\|	FastQC	% Failed	Percentage of modules failed in FastQC report (includes those not plotted here)	`percent_fails`	None
\|\|	FastQC	M Seqs	Total Sequences (millions)	`total_sequences`	read_count

Run Statistics

Showing ¹/₁ rows and ⁴/₄ columns.

Number of Lanes	Total # of Single-End Reads	Total # PF Reads	Undetermined	% PhiX Aligned
4.0	189602003	161220796	5.3	0.0

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	Undetermined	Undetermined	`Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

Demultiplexing Report

Demultiplexing Report
Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.
Perfect: The percentage of reads in this library which have a barcode perfectly matching the barcode specified in TuboWeb. The remainder of reads have mismatches upto the max number of mismatches specified in TuboWeb (Allowed barcode mismatch option in your Library Pool).

Showing ¹⁹²/₁₉₂ rows and ³/₃ columns.

Library	Total Read Count	Portion (%)	Perfect (%)
p6c2	1134189	0.7	97.0
p6d11	360112	0.2	97.4
p7c8	379306	0.2	96.4
p7b10	450049	0.3	97.2
p7f11	515846	0.3	96.9
p7b5	627942	0.4	96.5
p7b8	455996	0.3	97.1
p6b3	985851	0.6	97.2
p7g6	90404	0.1	96.7
p6e8	235900	0.2	96.8
p6c10	812882	0.5	97.2
p6h11	2155164	1.4	97.2
p6a12	435244	0.3	97.1
p6b2	943328	0.6	97.3
p6f12	279634	0.2	97.5
p7g7	1359101	0.9	96.9
p7h7	216989	0.1	96.2
p6h5	220822	0.1	96.2
p6g11	2816016	1.8	97.0
p6f6	2277047	1.5	97.7
p7g1	561927	0.4	97.3
p7c5	615145	0.4	95.8
p6a10	886964	0.6	97.4
p7f2	1285251	0.8	96.9
p6b8	621612	0.4	97.3
p7c11	791997	0.5	96.5
p7f10	800190	0.5	96.8
p6b6	112122	0.1	97.1
p6g6	749897	0.5	96.9
p6e10	2331651	1.5	97.3
p7b11	408830	0.3	97.2
p6a9	845214	0.6	97.2
p6e5	945775	0.6	96.5
p6c9	405121	0.3	97.2
p7c9	1354699	0.9	96.4
p6a2	1759145	1.2	97.5
p6h7	2056882	1.3	97.2
p6c5	1567151	1.0	96.3
p6g7	1440899	0.9	96.9
p6c11	67682	0.0	97.2
p6d10	300419	0.2	97.2
p7f4	886215	0.6	96.6
p7f7	2092233	1.4	96.8
p7f12	108390	0.1	96.4
p7f1	747762	0.5	96.9
p6g12	360402	0.2	96.8
p7h4	169260	0.1	96.4
p6b11	844681	0.6	97.3
p7e1	512592	0.3	97.3
p7f3	248294	0.2	96.8
p7a5	993097	0.7	96.2
p7a12	457394	0.3	96.7
p7b12	1627752	1.1	97.3
p6h3	1019032	0.7	97.2
p6a5	458182	0.3	96.6
p7g3	269747	0.2	97.0
p7f6	164147	0.1	96.6
p7f9	219842	0.1	96.3
p6h10	2778956	1.8	97.1
p6d2	1654293	1.1	97.4
p6e12	608312	0.4	97.2
p7h11	397791	0.3	96.9
p6d4	136138	0.1	96.9
p7g10	212797	0.1	97.1
p7a2	756561	0.5	96.9
p7f8	190390	0.1	96.5
p6d12	1294512	0.8	97.4
time2p6a1	476204	0.3	97.5
p7a6	1395431	0.9	96.8
p6h8	1131697	0.7	97.0
p7h6	205054	0.1	96.7
p7a8	1200584	0.8	96.9
p7c12	327408	0.2	96.6
p6b4	894982	0.6	97.0
p7d10	130176	0.1	96.8
p6a8	322833	0.2	97.3
p6e6	183566	0.1	96.8
p6g3	2096614	1.4	96.8
p6c3	1005353	0.7	97.0
p6d8	448860	0.3	97.1
p7e9	3751367	2.5	97.3
p6c8	445250	0.3	97.0
p6f7	674600	0.4	97.6
p6h6	1366536	0.9	97.1
p6b12	56356	0.0	97.1
p6f8	1437253	0.9	97.6
p6f1	178422	0.1	97.6
p7h9	335837	0.2	96.7
p7d11	441262	0.3	96.9
p6h1	1311541	0.9	97.2
p6g1	1331803	0.9	97.0
p7e6	1015597	0.7	97.3
p7g12	1177279	0.8	97.0
p7b4	781161	0.5	97.0
p7d2	770595	0.5	96.8
p7b2	271096	0.2	97.2
p7e5	852053	0.6	96.6
p7d12	71480	0.0	96.3
p6c1	614699	0.4	97.1
p6h2	1359800	0.9	97.2
p7g5	405561	0.3	96.6
p6c12	234755	0.2	97.1
p6b9	274392	0.2	97.3
p7d8	166325	0.1	96.8
p6a11	1083054	0.7	97.3
p6f2	1477389	1.0	97.7
p7b6	971606	0.6	97.3
p7e10	574212	0.4	97.1
p7c1	1245991	0.8	96.8
p7e11	250118	0.2	97.1
p6g5	386132	0.3	96.2
p7b3	1353145	0.9	97.3
p6e1	334849	0.2	97.2
p7e7	550099	0.4	97.0
p7c2	377287	0.2	96.8
p6e7	501397	0.3	97.1
p6d5	841074	0.6	96.7
p6a4	564103	0.4	97.2
p7d9	174855	0.1	96.9
p7h8	370666	0.2	96.6
p7c6	1110316	0.7	96.7
p7a4	181877	0.1	96.4
p7c7	980864	0.6	96.6
p6f4	1601952	1.1	97.5
p6e2	345520	0.2	97.1
p6g4	205869	0.1	96.8
p7e12	921677	0.6	97.2
p7c4	725050	0.5	96.6
p7g4	232400	0.2	96.8
p7b7	970534	0.6	97.2
p6a3	410096	0.3	97.3
p7a11	105382	0.1	96.4
p7b9	152744	0.1	96.9
p7e4	565871	0.4	97.0
p7e2	361143	0.2	97.2
p7d7	341903	0.2	96.5
p6a6	1479522	1.0	97.5
p7c10	239456	0.2	96.7
p7c3	236355	0.2	96.6
p7h10	737356	0.5	96.8
p7a7	320331	0.2	96.6
p6e9	558030	0.4	97.2
p7g9	303618	0.2	96.9
p7g11	386463	0.3	97.0
p6g8	2594528	1.7	96.8
p6d9	2030296	1.3	97.4
p7d6	127291	0.1	96.8
p7d5	785974	0.5	95.8
p6b5	1994389	1.3	96.6
p6b10	532282	0.3	97.3
p7h3	123160	0.1	96.4
p6f11	733106	0.5	97.7
p7f5	1666970	1.1	96.1
p6d6	188126	0.1	97.1
p7a10	1586986	1.0	96.9
p7a9	375297	0.2	96.7
p6h12	856851	0.6	97.2
p6f10	967995	0.6	97.6
p6d3	1231808	0.8	97.3
p6f3	642187	0.4	97.7
p6g10	320461	0.2	96.8
p6e4	376864	0.2	92.1
p6f9	2699695	1.8	97.7
p7d1	128449	0.1	97.0
p6h4	1977076	1.3	97.1
p6e11	366704	0.2	97.0
p7h5	171491	0.1	95.9
p6d1	842820	0.6	97.5
p6a7	465736	0.3	97.3
p6g9	2451166	1.6	96.9
p6c4	95560	0.1	96.5
p6c7	100350	0.1	97.1
p6c6	231995	0.2	97.0
p6e3	1824788	1.2	97.2
p6d7	2080247	1.4	97.3
p7b1	398747	0.3	97.4
p7a3	165124	0.1	96.7
p7h12	1616674	1.1	96.9
p7d4	1152520	0.8	96.5
p7h2	387500	0.3	96.9
p7e3	371185	0.2	97.2
p6f5	776317	0.5	96.9
p6g2	274186	0.2	97.0
p7e8	429229	0.3	97.1
p6h9	3266775	2.1	97.1
p7h1	109366	0.1	96.4
p7g8	1015422	0.7	97.1
p7d3	99893	0.1	96.7
p6b7	625448	0.4	97.2
time1p7a1	6794	0.0	94.5
p6b1	598365	0.4	97.3
p7g2	1234307	0.8	97.2

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total Read Count	Total Read Count	`Total Read Count`	None
\|\|	Portion (%)	Portion (%)	`Portion (%)`	None
\|\|	Perfect (%)	Perfect (%)	`Perfect (%)`	None

FastQC

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

Sequence Quality Histograms

The mean quality value across each base position in the read. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

Click a heatmap row to see a line plot for that dataset.

rollover for sample name

Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base N Content

The percentage of base calls at each position for which an N was called. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Length Distribution

All samples have sequences of a single length (151bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Overrepresented sequences

The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

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About MultiQC

General Statistics

General Statistics: Columns

Run Statistics

Table Qynp: Columns

Demultiplexing Report

Table Ycgd: Columns

FastQC

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

rollover for sample name

Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

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