H55FTAFXY_n01_p7f8.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H55FTAFXY_n01_p7f8.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	190390
Sequences flagged as poor quality	0
Sequence length	151
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3701	1.9439046168391199	No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1003	0.5268133830558327	No Hit
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	808	0.4243920373969221	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	690	0.36241399233153004	No Hit
CGTCTAGATCGGAAGAGCACACGTCTAGATCGGAAGAGCACACGTCTAGA	373	0.1959136509270445	Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GACGTGTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	221	0.11607752508009873	No Hit
CGTGTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	220	0.11555228741005304	No Hit
ATCTAGACGTGTGCTCTTCCGATCTAGACGTGTGCTCTTCCGATCTAGAC	196	0.10294658332895634	Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACTAGT	10	0.0070863846	145.0	2
TGTGTAC	35	0.0035620697	62.142857	3
ATGCATC	40	0.006043392	54.375	4
TTAGAGT	45	0.009627241	48.333336	4
TGCATCG	45	0.009627241	48.333336	5
TATACTG	70	0.0010544843	41.42857	5
GATCTTT	900	0.0	37.055557	6
CTGCAGG	160	4.5563866E-8	36.25	1
ATCTTTT	805	0.0	36.024845	7
TGTACTG	85	0.0027364383	34.117645	5
CTTTTTT	865	0.0	33.52601	9
TCTTTTT	865	0.0	33.52601	8
ATCTATG	90	0.0036209116	32.222225	7
CTATACA	115	3.1525618E-4	31.52174	4
CGATCTT	1660	0.0	30.572289	5
CACCGTG	120	4.045836E-4	30.208334	7
AATCGGA	145	3.475722E-5	30.0	1
ATCTCTG	100	0.0060622767	29.0	7
CGTCTAG	475	0.0	27.473684	1
CCTAGGG	160	6.7996094E-5	27.1875	2