H55FTAFXY_n01_p6d4.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H55FTAFXY_n01_p6d4.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	136138
Sequences flagged as poor quality	0
Sequence length	151
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1373	1.0085354566689682	No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	618	0.4539511378160396	No Hit
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	569	0.4179582482481012	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	430	0.3158559696778269	No Hit
GACGTGTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	284	0.20861184974070426	No Hit
CGTGTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	213	0.1564588873055282	No Hit
TTGTAGACGTGTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTT	174	0.127811485404516	Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCT	10	0.007084181	145.0	9
ACTGTGC	20	3.858806E-4	108.75	8
CATTGGA	45	1.19016986E-4	64.44444	2
CTACAGG	50	2.0040516E-4	58.0	1
TATATCT	40	0.006039704	54.375	4
CCCCTGA	70	1.688188E-5	51.785713	1
AATCGGA	135	1.8735591E-10	48.333336	1
ATCTATG	45	0.00962139	48.333332	7
ACATTCC	45	0.00962139	48.333332	7
GTATAGC	45	0.00962139	48.333332	3
TGTAGAC	90	1.3150893E-6	48.333332	2
ATTATGG	60	4.929936E-4	48.333332	1
TCTGACC	95	1.9085946E-6	45.789474	8
CTGTCCA	65	7.314179E-4	44.615387	9
GAACTAT	65	7.314179E-4	44.615387	6
ATCTGTG	115	1.4005673E-7	44.130436	7
ATAGGGA	85	5.3171123E-5	42.64706	3
TGCAGAC	90	7.4483694E-5	40.27778	2
TTGTAGA	115	7.0973783E-6	37.826088	1
ATCTTGC	125	1.2570919E-5	34.8	7