FastQCFastQC Report
Fri 22 Oct 2021
H553JAFX3_n01_AtTGA5-MtLeaf-B_u.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH553JAFX3_n01_AtTGA5-MtLeaf-B_u.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9927008
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTACGTCATCCGGACGAACTATCACCTAATTGACTAGTCAACTTAGGA146850.14792976896966337No Hit
GTACGTCATCCGGACGAACTATCACCTAATTGACTAGTCAACTTAGGAAC125200.126120579332665No Hit
ACGTCATCCGGACGAACTATCACCTAATTGACTAGTCAACTTAGGAACTA124420.125334844094011No Hit
GGTACGTCATCCGGACGAACTATCACCTAATTGACTAGTCAACTTAGGAA104480.10524822786483097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)