[2022-05-05 13:21:18,926] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml
[2022-05-05 13:21:18,926] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml
[2022-05-05 13:21:18,926] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2022-05-05 13:21:18,927] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml
[2022-05-05 13:21:18,927] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2022-05-05 13:21:18,927] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H53TJDRX2/merged
[2022-05-05 13:21:19,373] multiqc [WARNING] MultiQC Version v1.12 now available!
[2022-05-05 13:21:19,373] multiqc [INFO ] This is MultiQC v1.9
[2022-05-05 13:21:19,373] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H53TJDRX2/merged
[2022-05-05 13:21:19,374] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H53TJDRX2/merged
[2022-05-05 13:21:19,374] multiqc [INFO ] Template : default
[2022-05-05 13:21:19,374] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode]
[2022-05-05 13:21:19,374] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H53TJDRX2/merged
[2022-05-05 13:21:19,374] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean
[2022-05-05 13:21:19,374] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-19082766/tmpl533fso2
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[2022-05-05 13:21:26,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_30_fastqc.html
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[2022-05-05 13:21:26,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_1_fastqc.html
[2022-05-05 13:21:26,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_13_fastqc.html
[2022-05-05 13:21:26,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_13_fastqc.html
[2022-05-05 13:21:26,765] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_3_fastqc.html
[2022-05-05 13:21:26,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_3_fastqc.html
[2022-05-05 13:21:26,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_34_fastqc.html
[2022-05-05 13:21:26,829] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_34_fastqc.html
[2022-05-05 13:21:26,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_33_fastqc.html
[2022-05-05 13:21:26,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_33_fastqc.html
[2022-05-05 13:21:26,928] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_44_fastqc.html
[2022-05-05 13:21:26,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_44_fastqc.html
[2022-05-05 13:21:26,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_12_fastqc.html
[2022-05-05 13:21:26,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_12_fastqc.html
[2022-05-05 13:21:27,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_20_fastqc.html
[2022-05-05 13:21:27,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_20_fastqc.html
[2022-05-05 13:21:27,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_9_fastqc.html
[2022-05-05 13:21:27,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_9_fastqc.html
[2022-05-05 13:21:27,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_5_fastqc.html
[2022-05-05 13:21:27,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_5_fastqc.html
[2022-05-05 13:21:27,221] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_13_fastqc.html
[2022-05-05 13:21:27,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_13_fastqc.html
[2022-05-05 13:21:27,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_13_fastqc.html
[2022-05-05 13:21:27,290] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_13_fastqc.html
[2022-05-05 13:21:27,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_23_fastqc.html
[2022-05-05 13:21:27,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_23_fastqc.html
[2022-05-05 13:21:27,394] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_19_fastqc.html
[2022-05-05 13:21:27,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_19_fastqc.html
[2022-05-05 13:21:27,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_12_fastqc.html
[2022-05-05 13:21:27,447] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_12_fastqc.html
[2022-05-05 13:21:27,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_1_fastqc.html
[2022-05-05 13:21:27,505] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_1_fastqc.html
[2022-05-05 13:21:27,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_7_fastqc.html
[2022-05-05 13:21:27,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_7_fastqc.html
[2022-05-05 13:21:27,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_33_fastqc.html
[2022-05-05 13:21:27,613] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_33_fastqc.html
[2022-05-05 13:21:27,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_3_fastqc.html
[2022-05-05 13:21:27,678] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_3_fastqc.html
[2022-05-05 13:21:27,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_35_fastqc.html
[2022-05-05 13:21:27,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_35_fastqc.html
[2022-05-05 13:21:27,805] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_37_fastqc.html
[2022-05-05 13:21:27,807] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_37_fastqc.html
[2022-05-05 13:21:27,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_14_fastqc.html
[2022-05-05 13:21:27,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_14_fastqc.html
[2022-05-05 13:21:27,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_16_fastqc.html
[2022-05-05 13:21:27,934] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_16_fastqc.html
[2022-05-05 13:21:27,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_34_fastqc.html
[2022-05-05 13:21:27,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_34_fastqc.html
[2022-05-05 13:21:28,036] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_27_fastqc.html
[2022-05-05 13:21:28,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_27_fastqc.html
[2022-05-05 13:21:28,083] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_29_fastqc.html
[2022-05-05 13:21:28,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_29_fastqc.html
[2022-05-05 13:21:28,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_11_fastqc.html
[2022-05-05 13:21:28,150] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_11_fastqc.html
[2022-05-05 13:21:28,195] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_fastqc.html
[2022-05-05 13:21:28,197] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_fastqc.html
[2022-05-05 13:21:28,242] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_8_fastqc.html
[2022-05-05 13:21:28,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_8_fastqc.html
[2022-05-05 13:21:28,289] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_16_fastqc.html
[2022-05-05 13:21:28,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_16_fastqc.html
[2022-05-05 13:21:28,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_32_fastqc.html
[2022-05-05 13:21:28,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_32_fastqc.html
[2022-05-05 13:21:28,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_22_fastqc.html
[2022-05-05 13:21:28,419] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_22_fastqc.html
[2022-05-05 13:21:28,463] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_22_fastqc.html
[2022-05-05 13:21:28,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_22_fastqc.html
[2022-05-05 13:21:28,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_40_fastqc.html
[2022-05-05 13:21:28,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_40_fastqc.html
[2022-05-05 13:21:28,556] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_42_fastqc.html
[2022-05-05 13:21:28,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_42_fastqc.html
[2022-05-05 13:21:28,620] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_36_fastqc.html
[2022-05-05 13:21:28,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_36_fastqc.html
[2022-05-05 13:21:28,667] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_39_fastqc.html
[2022-05-05 13:21:28,669] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_39_fastqc.html
[2022-05-05 13:21:28,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_40_fastqc.html
[2022-05-05 13:21:28,749] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_40_fastqc.html
[2022-05-05 13:21:28,795] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_43_fastqc.html
[2022-05-05 13:21:28,797] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_43_fastqc.html
[2022-05-05 13:21:28,849] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_2_fastqc.html
[2022-05-05 13:21:28,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_2_fastqc.html
[2022-05-05 13:21:28,895] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_3_fastqc.html
[2022-05-05 13:21:28,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_3_fastqc.html
[2022-05-05 13:21:28,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_20_fastqc.html
[2022-05-05 13:21:28,960] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_20_fastqc.html
[2022-05-05 13:21:29,018] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_20_fastqc.html
[2022-05-05 13:21:29,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_20_fastqc.html
[2022-05-05 13:21:29,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_23_fastqc.html
[2022-05-05 13:21:29,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_23_fastqc.html
[2022-05-05 13:21:29,135] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_17_fastqc.html
[2022-05-05 13:21:29,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_17_fastqc.html
[2022-05-05 13:21:29,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_26_fastqc.html
[2022-05-05 13:21:29,186] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_Z_1_26_fastqc.html
[2022-05-05 13:21:29,295] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_21_fastqc.html
[2022-05-05 13:21:29,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n02_J_1_21_fastqc.html
[2022-05-05 13:21:29,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_24_fastqc.html
[2022-05-05 13:21:29,369] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_24_fastqc.html
[2022-05-05 13:21:29,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_40_fastqc.html
[2022-05-05 13:21:29,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_Z_1_40_fastqc.html
[2022-05-05 13:21:29,501] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_6_fastqc.html
[2022-05-05 13:21:29,503] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_6_fastqc.html
[2022-05-05 13:21:29,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_34_fastqc.html
[2022-05-05 13:21:29,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53TJDRX2_n01_J_1_34_fastqc.html
[2022-05-05 13:21:29,962] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2
[2022-05-05 13:21:29,963] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2
[2022-05-05 13:21:30,012] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 88 samples (table)
[2022-05-05 13:21:30,022] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2022-05-05 13:21:30,023] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2022-05-05 13:21:30,029] multiqc [DEBUG ] No samples found: conpair
[2022-05-05 13:21:30,034] multiqc [DEBUG ] No samples found: peddy
[2022-05-05 13:21:30,039] multiqc [DEBUG ] No samples found: somalier
[2022-05-05 13:21:30,044] multiqc [DEBUG ] No samples found: methylQA
[2022-05-05 13:21:30,052] multiqc [DEBUG ] No samples found: mosdepth
[2022-05-05 13:21:30,057] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2022-05-05 13:21:30,060] multiqc [DEBUG ] No samples found: qualimap
[2022-05-05 13:21:30,065] multiqc [DEBUG ] No samples found: preseq
[2022-05-05 13:21:30,070] multiqc [DEBUG ] No samples found: quast
[2022-05-05 13:21:30,075] multiqc [DEBUG ] No samples found: qorts
[2022-05-05 13:21:30,080] multiqc [DEBUG ] No samples found: rna_seqc
[2022-05-05 13:21:30,085] multiqc [DEBUG ] No samples found: rockhopper
[2022-05-05 13:21:30,089] multiqc [DEBUG ] No samples found: rsem
[2022-05-05 13:21:30,101] multiqc [DEBUG ] No samples found: rseqc
[2022-05-05 13:21:30,105] multiqc [DEBUG ] No samples found: busco
[2022-05-05 13:21:30,110] multiqc [DEBUG ] No samples found: goleft_indexcov
[2022-05-05 13:21:30,115] multiqc [DEBUG ] No samples found: disambiguate
[2022-05-05 13:21:30,119] multiqc [DEBUG ] No samples found: supernova
[2022-05-05 13:21:30,133] multiqc [DEBUG ] No samples found: deeptools
[2022-05-05 13:21:30,138] multiqc [DEBUG ] No samples found: sargasso
[2022-05-05 13:21:30,143] multiqc [DEBUG ] No samples found: verifybamid
[2022-05-05 13:21:30,148] multiqc [DEBUG ] No samples found: mirtrace
[2022-05-05 13:21:30,153] multiqc [DEBUG ] No samples found: happy
[2022-05-05 13:21:30,158] multiqc [DEBUG ] No samples found: mirtop
[2022-05-05 13:21:30,165] multiqc [DEBUG ] No samples found: homer
[2022-05-05 13:21:30,169] multiqc [DEBUG ] No samples found: macs2
[2022-05-05 13:21:30,174] multiqc [DEBUG ] No samples found: theta2
[2022-05-05 13:21:30,179] multiqc [DEBUG ] No samples found: snpeff
[2022-05-05 13:21:30,186] multiqc [DEBUG ] No samples found: gatk
[2022-05-05 13:21:30,191] multiqc [DEBUG ] No samples found: htseq
[2022-05-05 13:21:30,196] multiqc [DEBUG ] No samples found: bcftools
[2022-05-05 13:21:30,201] multiqc [DEBUG ] No samples found: featureCounts
[2022-05-05 13:21:30,208] multiqc [DEBUG ] No samples found: fgbio
[2022-05-05 13:21:30,221] multiqc [DEBUG ] No samples found: dragen
[2022-05-05 13:21:30,226] multiqc [DEBUG ] No samples found: dedup
[2022-05-05 13:21:30,231] multiqc [DEBUG ] No samples found: damageprofiler
[2022-05-05 13:21:30,255] multiqc [DEBUG ] No samples found: biobambam2
[2022-05-05 13:21:30,260] multiqc [DEBUG ] No samples found: mtnucratio
[2022-05-05 13:21:30,263] multiqc [DEBUG ] No samples found: picard
[2022-05-05 13:21:30,267] multiqc [DEBUG ] No samples found: prokka
[2022-05-05 13:21:30,272] multiqc [DEBUG ] No samples found: samblaster
[2022-05-05 13:21:30,280] multiqc [DEBUG ] No samples found: samtools
[2022-05-05 13:21:30,285] multiqc [DEBUG ] No samples found: sexdeterrmine
[2022-05-05 13:21:30,291] multiqc [DEBUG ] No samples found: bamtools
[2022-05-05 13:21:30,295] multiqc [DEBUG ] No samples found: jellyfish
[2022-05-05 13:21:30,302] multiqc [DEBUG ] No samples found: vcftools
[2022-05-05 13:21:30,307] multiqc [DEBUG ] No samples found: longranger
[2022-05-05 13:21:30,312] multiqc [DEBUG ] No samples found: stacks
[2022-05-05 13:21:30,317] multiqc [DEBUG ] No samples found: varscan2
[2022-05-05 13:21:30,331] multiqc [DEBUG ] No samples found: bbmap
[2022-05-05 13:21:30,336] multiqc [DEBUG ] No samples found: bismark
[2022-05-05 13:21:30,342] multiqc [DEBUG ] No samples found: biscuit
[2022-05-05 13:21:30,347] multiqc [DEBUG ] No samples found: hicexplorer
[2022-05-05 13:21:30,352] multiqc [DEBUG ] No samples found: hicup
[2022-05-05 13:21:30,357] multiqc [DEBUG ] No samples found: hicpro
[2022-05-05 13:21:30,361] multiqc [DEBUG ] No samples found: salmon
[2022-05-05 13:21:30,366] multiqc [DEBUG ] No samples found: kallisto
[2022-05-05 13:21:30,371] multiqc [DEBUG ] No samples found: slamdunk
[2022-05-05 13:21:30,376] multiqc [DEBUG ] No samples found: star
[2022-05-05 13:21:30,381] multiqc [DEBUG ] No samples found: hisat2
[2022-05-05 13:21:30,386] multiqc [DEBUG ] No samples found: tophat
[2022-05-05 13:21:30,391] multiqc [DEBUG ] No samples found: bowtie2
[2022-05-05 13:21:30,396] multiqc [DEBUG ] No samples found: bowtie1
[2022-05-05 13:21:30,400] multiqc [DEBUG ] No samples found: snpsplit
[2022-05-05 13:21:30,405] multiqc [DEBUG ] No samples found: kat
[2022-05-05 13:21:30,410] multiqc [DEBUG ] No samples found: leehom
[2022-05-05 13:21:30,415] multiqc [DEBUG ] No samples found: adapterRemoval
[2022-05-05 13:21:30,420] multiqc [DEBUG ] No samples found: clipandmerge
[2022-05-05 13:21:30,425] multiqc [DEBUG ] No samples found: cutadapt
[2022-05-05 13:21:30,430] multiqc [DEBUG ] No samples found: flexbar
[2022-05-05 13:21:30,435] multiqc [DEBUG ] No samples found: kaiju
[2022-05-05 13:21:30,440] multiqc [DEBUG ] No samples found: kraken
[2022-05-05 13:21:30,445] multiqc [DEBUG ] No samples found: malt
[2022-05-05 13:21:30,450] multiqc [DEBUG ] No samples found: trimmomatic
[2022-05-05 13:21:30,455] multiqc [DEBUG ] No samples found: sickle
[2022-05-05 13:21:30,460] multiqc [DEBUG ] No samples found: skewer
[2022-05-05 13:21:30,464] multiqc [DEBUG ] No samples found: sortmerna
[2022-05-05 13:21:30,469] multiqc [DEBUG ] No samples found: biobloomtools
[2022-05-05 13:21:30,474] multiqc [DEBUG ] No samples found: fastq_screen
[2022-05-05 13:21:30,479] multiqc [DEBUG ] No samples found: afterqc
[2022-05-05 13:21:30,484] multiqc [DEBUG ] No samples found: fastp
[2022-05-05 13:21:40,848] multiqc.modules.fastqc.fastqc [INFO ] Found 176 reports
[2022-05-05 13:21:57,841] multiqc [DEBUG ] No samples found: pycoqc
[2022-05-05 13:21:57,846] multiqc [DEBUG ] No samples found: minionqc
[2022-05-05 13:21:57,852] multiqc [DEBUG ] No samples found: multivcfanalyzer
[2022-05-05 13:21:57,857] multiqc [DEBUG ] No samples found: clusterflow
[2022-05-05 13:21:57,863] multiqc [DEBUG ] No samples found: bcl2fastq
[2022-05-05 13:21:57,868] multiqc [DEBUG ] No samples found: interop
[2022-05-05 13:21:57,874] multiqc [DEBUG ] No samples found: ivar
[2022-05-05 13:21:57,879] multiqc [DEBUG ] No samples found: flash
[2022-05-05 13:21:57,884] multiqc [DEBUG ] No samples found: seqyclean
[2022-05-05 13:21:57,884] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'.
[2022-05-05 13:21:57,884] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'.
[2022-05-05 13:21:57,884] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'.
[2022-05-05 13:21:57,884] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'.
[2022-05-05 13:21:58,100] multiqc [INFO ] Compressing plot data
[2022-05-05 13:21:58,161] multiqc [INFO ] Report : multiqc_report.html
[2022-05-05 13:21:58,161] multiqc [INFO ] Data : multiqc_data
[2022-05-05 13:21:58,161] multiqc [DEBUG ] Moving data file from '/state/partition1/job-19082766/tmpl533fso2/multiqc_data' to '/scratch/gencore/logs/html/H53TJDRX2/merged/multiqc_data'
[2022-05-05 13:21:58,313] multiqc [INFO ] MultiQC complete