[2022-04-27 07:45:39,955] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2022-04-27 07:45:39,956] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2022-04-27 07:45:39,956] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-04-27 07:45:39,957] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2022-04-27 07:45:39,957] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2022-04-27 07:45:39,957] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H53K3DRX2/merged [2022-04-27 07:45:40,565] multiqc [WARNING] MultiQC Version v1.12 now available! [2022-04-27 07:45:40,565] multiqc [INFO ] This is MultiQC v1.9 [2022-04-27 07:45:40,566] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H53K3DRX2/merged [2022-04-27 07:45:40,566] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H53K3DRX2/merged [2022-04-27 07:45:40,566] multiqc [INFO ] Template : default [2022-04-27 07:45:40,566] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2022-04-27 07:45:40,566] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H53K3DRX2/merged [2022-04-27 07:45:40,566] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-04-27 07:45:40,566] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-18672723/tmp_52ydtr5 [2022-04-27 07:45:40,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53K3DRX2_2_fastqc.html [2022-04-27 07:45:40,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53K3DRX2_2_fastqc.html [2022-04-27 07:45:40,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53K3DRX2_4_fastqc.html [2022-04-27 07:45:40,755] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53K3DRX2_4_fastqc.html [2022-04-27 07:45:40,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53K3DRX2_1_fastqc.html [2022-04-27 07:45:40,820] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53K3DRX2_1_fastqc.html [2022-04-27 07:45:40,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H53K3DRX2_3_fastqc.html [2022-04-27 07:45:40,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H53K3DRX2_3_fastqc.html [2022-04-27 07:45:41,411] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2022-04-27 07:45:41,412] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2022-04-27 07:45:41,416] multiqc.modules.custom_content.custom_content [WARNING] Not able to parse custom data in undetermined_barcodes_mqc.txt [2022-04-27 07:45:41,418] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2022-04-27 07:45:41,423] multiqc [DEBUG ] No samples found: conpair [2022-04-27 07:45:41,427] multiqc [DEBUG ] No samples found: peddy [2022-04-27 07:45:41,433] multiqc [DEBUG ] No samples found: somalier [2022-04-27 07:45:41,443] multiqc [DEBUG ] No samples found: methylQA [2022-04-27 07:45:41,451] multiqc [DEBUG ] No samples found: mosdepth [2022-04-27 07:45:41,455] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-04-27 07:45:41,459] multiqc [DEBUG ] No samples found: qualimap [2022-04-27 07:45:41,464] multiqc [DEBUG ] No samples found: preseq [2022-04-27 07:45:41,469] multiqc [DEBUG ] No samples found: quast [2022-04-27 07:45:41,474] multiqc [DEBUG ] No samples found: qorts [2022-04-27 07:45:41,479] multiqc [DEBUG ] No samples found: rna_seqc [2022-04-27 07:45:41,484] multiqc [DEBUG ] No samples found: rockhopper [2022-04-27 07:45:41,488] multiqc [DEBUG ] No samples found: rsem [2022-04-27 07:45:41,500] multiqc [DEBUG ] No samples found: rseqc [2022-04-27 07:45:41,505] multiqc [DEBUG ] No samples found: busco [2022-04-27 07:45:41,509] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-04-27 07:45:41,513] multiqc [DEBUG ] No samples found: disambiguate [2022-04-27 07:45:41,519] multiqc [DEBUG ] No samples found: supernova [2022-04-27 07:45:41,532] multiqc [DEBUG ] No samples found: deeptools [2022-04-27 07:45:41,537] multiqc [DEBUG ] No samples found: sargasso [2022-04-27 07:45:41,542] multiqc [DEBUG ] No samples found: verifybamid [2022-04-27 07:45:41,547] multiqc [DEBUG ] No samples found: mirtrace [2022-04-27 07:45:41,552] multiqc [DEBUG ] No samples found: happy [2022-04-27 07:45:41,557] multiqc [DEBUG ] No samples found: mirtop [2022-04-27 07:45:41,563] multiqc [DEBUG ] No samples found: homer [2022-04-27 07:45:41,568] multiqc [DEBUG ] No samples found: macs2 [2022-04-27 07:45:41,572] multiqc [DEBUG ] No samples found: theta2 [2022-04-27 07:45:41,577] multiqc [DEBUG ] No samples found: snpeff [2022-04-27 07:45:41,583] multiqc [DEBUG ] No samples found: gatk [2022-04-27 07:45:41,588] multiqc [DEBUG ] No samples found: htseq [2022-04-27 07:45:41,594] multiqc [DEBUG ] No samples found: bcftools [2022-04-27 07:45:41,600] multiqc [DEBUG ] No samples found: featureCounts [2022-04-27 07:45:41,606] multiqc [DEBUG ] No samples found: fgbio [2022-04-27 07:45:41,619] multiqc [DEBUG ] No samples found: dragen [2022-04-27 07:45:41,624] multiqc [DEBUG ] No samples found: dedup [2022-04-27 07:45:41,630] multiqc [DEBUG ] No samples found: damageprofiler [2022-04-27 07:45:41,653] multiqc [DEBUG ] No samples found: biobambam2 [2022-04-27 07:45:41,659] multiqc [DEBUG ] No samples found: mtnucratio [2022-04-27 07:45:41,662] multiqc [DEBUG ] No samples found: picard [2022-04-27 07:45:41,667] multiqc [DEBUG ] No samples found: prokka [2022-04-27 07:45:41,671] multiqc [DEBUG ] No samples found: samblaster [2022-04-27 07:45:41,679] multiqc [DEBUG ] No samples found: samtools [2022-04-27 07:45:41,684] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-04-27 07:45:41,689] multiqc [DEBUG ] No samples found: bamtools [2022-04-27 07:45:41,693] multiqc [DEBUG ] No samples found: jellyfish [2022-04-27 07:45:41,700] multiqc [DEBUG ] No samples found: vcftools [2022-04-27 07:45:41,705] multiqc [DEBUG ] No samples found: longranger [2022-04-27 07:45:41,710] multiqc [DEBUG ] No samples found: stacks [2022-04-27 07:45:41,714] multiqc [DEBUG ] No samples found: varscan2 [2022-04-27 07:45:41,728] multiqc [DEBUG ] No samples found: bbmap [2022-04-27 07:45:41,732] multiqc [DEBUG ] No samples found: bismark [2022-04-27 07:45:41,737] multiqc [DEBUG ] No samples found: biscuit [2022-04-27 07:45:41,743] multiqc [DEBUG ] No samples found: hicexplorer [2022-04-27 07:45:41,747] multiqc [DEBUG ] No samples found: hicup [2022-04-27 07:45:41,753] multiqc [DEBUG ] No samples found: hicpro [2022-04-27 07:45:41,757] multiqc [DEBUG ] No samples found: salmon [2022-04-27 07:45:41,762] multiqc [DEBUG ] No samples found: kallisto [2022-04-27 07:45:41,767] multiqc [DEBUG ] No samples found: slamdunk [2022-04-27 07:45:41,773] multiqc [DEBUG ] No samples found: star [2022-04-27 07:45:41,778] multiqc [DEBUG ] No samples found: hisat2 [2022-04-27 07:45:41,782] multiqc [DEBUG ] No samples found: tophat [2022-04-27 07:45:41,788] multiqc [DEBUG ] No samples found: bowtie2 [2022-04-27 07:45:41,793] multiqc [DEBUG ] No samples found: bowtie1 [2022-04-27 07:45:41,798] multiqc [DEBUG ] No samples found: snpsplit [2022-04-27 07:45:41,802] multiqc [DEBUG ] No samples found: kat [2022-04-27 07:45:41,807] multiqc [DEBUG ] No samples found: leehom [2022-04-27 07:45:41,811] multiqc [DEBUG ] No samples found: adapterRemoval [2022-04-27 07:45:41,815] multiqc [DEBUG ] No samples found: clipandmerge [2022-04-27 07:45:41,820] multiqc [DEBUG ] No samples found: cutadapt [2022-04-27 07:45:41,825] multiqc [DEBUG ] No samples found: flexbar [2022-04-27 07:45:41,829] multiqc [DEBUG ] No samples found: kaiju [2022-04-27 07:45:41,834] multiqc [DEBUG ] No samples found: kraken [2022-04-27 07:45:41,839] multiqc [DEBUG ] No samples found: malt [2022-04-27 07:45:41,843] multiqc [DEBUG ] No samples found: trimmomatic [2022-04-27 07:45:41,847] multiqc [DEBUG ] No samples found: sickle [2022-04-27 07:45:41,852] multiqc [DEBUG ] No samples found: skewer [2022-04-27 07:45:41,857] multiqc [DEBUG ] No samples found: sortmerna [2022-04-27 07:45:41,861] multiqc [DEBUG ] No samples found: biobloomtools [2022-04-27 07:45:41,866] multiqc [DEBUG ] No samples found: fastq_screen [2022-04-27 07:45:41,871] multiqc [DEBUG ] No samples found: afterqc [2022-04-27 07:45:41,875] multiqc [DEBUG ] No samples found: fastp [2022-04-27 07:45:42,034] multiqc.modules.fastqc.fastqc [INFO ] Found 4 reports [2022-04-27 07:45:42,082] multiqc [DEBUG ] No samples found: pycoqc [2022-04-27 07:45:42,087] multiqc [DEBUG ] No samples found: minionqc [2022-04-27 07:45:42,092] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-04-27 07:45:42,096] multiqc [DEBUG ] No samples found: clusterflow [2022-04-27 07:45:42,101] multiqc [DEBUG ] No samples found: bcl2fastq [2022-04-27 07:45:42,106] multiqc [DEBUG ] No samples found: interop [2022-04-27 07:45:42,111] multiqc [DEBUG ] No samples found: ivar [2022-04-27 07:45:42,116] multiqc [DEBUG ] No samples found: flash [2022-04-27 07:45:42,121] multiqc [DEBUG ] No samples found: seqyclean [2022-04-27 07:45:42,121] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2022-04-27 07:45:42,121] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2022-04-27 07:45:42,121] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2022-04-27 07:45:42,127] multiqc [INFO ] Compressing plot data [2022-04-27 07:45:42,194] multiqc [INFO ] Report : multiqc_report.html [2022-04-27 07:45:42,194] multiqc [INFO ] Data : multiqc_data [2022-04-27 07:45:42,194] multiqc [DEBUG ] Moving data file from '/state/partition1/job-18672723/tmp_52ydtr5/multiqc_data' to '/scratch/gencore/logs/html/H53K3DRX2/merged/multiqc_data' [2022-04-27 07:45:42,323] multiqc [INFO ] MultiQC complete