FastQCFastQC Report
Sun 14 May 2023
H52YHDSX7_l03_n01_9R_1-9.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH52YHDSX7_l03_n01_9R_1-9.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23157129
Sequences flagged as poor quality0
Sequence length101
%GC31

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA675600.2917460104834239No Hit
TTATCATATAATTTCTGTTGAATTACGTTAAGCATGTAATAATTAACATG270910.11698773194207279No Hit
TGCGATTATTATCATATAATTTCTGTTGAATTACGTTAAGCATGTAATAA239890.10359228900957455No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)