FastQCFastQC Report
Sun 14 May 2023
H52YHDSX7_l03_n01_9G_1-11.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH52YHDSX7_l03_n01_9G_1-11.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42873329
Sequences flagged as poor quality0
Sequence length101
%GC31

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA725560.16923341782020238No Hit
TTATCATATAATTTCTGTTGAATTACGTTAAGCATGTAATAATTAACATG668120.1558358111169767No Hit
TGCGATTATTATCATATAATTTCTGTTGAATTACGTTAAGCATGTAATAA613310.14305163940033674No Hit
TGCCGGTCTTGCGATGATTATCATATAATTTCTGTTGAATTACGTTAAGC595030.13878791637570295No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)