FastQCFastQC Report
Mon 30 Nov 2015
H3WLMAFXX_n01_sv97.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3WLMAFXX_n01_sv97.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32053631
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG32900.029.74965943
CTCGTAT34000.028.78721442
CGTATGC37600.026.86864544
TCTCGTA35900.026.82480641
AATCTCG41400.024.07616439
ATCTCGT43750.022.0631740
CGTCTGA54050.020.27204116
ACACGTC56100.019.77192713
ACGTCTG59800.018.3604315
GTATGCC59650.017.65286645
CACGTCT68150.016.1438814
ATCGGAA74500.015.1311322
GATCGGA75850.014.7447081
GACCAAT72600.014.25615535
CACACGT82050.013.7106412
ACCAATC77850.013.49713136
TCGGAAG95450.012.0929833
CGGAAGA100000.011.5203244
GCACACG100150.011.50229811
ACTGACC104500.010.808932
Produced by FastQC (version 0.11.2)