H3WGNAFXY_n02_oat2_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3WGNAFXY_n02_oat2_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3021358
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	215890	7.145462404653802	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGG	12510	0.41405222419852267	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG	5188	0.1717108664382043	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTCGCCTGTGTAGATC	4320	0.14298206303258337	Illumina Single End PCR Primer 1 (96% over 33bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGG	3932	0.1301401555194717	No Hit
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	3671	0.1215016558779198	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGG	3417	0.11309484013480031	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT	3267	0.10813018516839118	No Hit
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	3249	0.10753442657242206	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGG	3134	0.10372819109817506	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGG	3041	0.1006501050190014	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGGTGG	890	48.765232	51
CGGTGGT	900	48.613907	52
GGTGGTC	925	46.543217	53
GTAGATC	1030	43.498363	44
TAGATCT	1070	40.890877	45
GTGGTCG	1080	40.51159	54
GGTCGCC	1125	39.822533	56
GTGTAGA	1195	38.66139	42
AGTGTCT	1165	38.157963	29
TGTGTAG	1190	37.647354	41
GGAAAAA	25960	37.611088	70
GAGTGTC	1240	36.68837	28
ACTAGAG	680	36.535934	20
CGTGTAG	1305	36.466328	16
CTCGGTG	1200	36.16755	50
AGAGTGT	1315	35.660362	27
TGGTCGC	1315	35.133934	55
TAGGGAA	1350	34.992165	20
AGAGTAC	710	34.50103	23
GTGTCTT	1310	34.4682	30