H3WGNAFXY_n01_79t1_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3WGNAFXY_n01_79t1_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3301804
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTAT	121238	3.6718714981264786	TruSeq Adapter, Index 7 (97% over 38bp)
GAAAAACAAAAAAAGGGAGGATTCAATTATGAAAAAAGCTGTCATTGTAG	14624	0.44290939135091	No Hit
AAAAAAGGGAGGATTCAATTATGAAAAAAGCTGTCATTGTAGAAAACAAA	8141	0.24656218237060712	No Hit
GGAGGATTCAATTATGAAAAAAGCTGTCATTGTAGAAAACAAAGGTTGTG	6571	0.1990124186656749	No Hit
AAAAAAAGGGAGGATTCAATTATGAAAAAAGCTGTCATTGTAGAAAACAA	5442	0.16481898986130006	No Hit
CAATTATGAAAAAAGCTGTCATTGTAGAAAACAAAGGTTGTGCAACATGC	5235	0.1585496898059364	No Hit
TAGACCTGTTGCACCGGCAATTTCAAAATCAGGGATAGGACCGTCCACTA	4934	0.14943346122301626	No Hit
GGCAATTTCAAAATCAGGGATAGGACCGTCCACTAGACAAGCGGCTCCGA	4841	0.14661681916915723	No Hit
GAAAAAAGCTGTCATTGTAGAAAACAAAGGTTGTGCAACATGCTCGATCG	4370	0.13235189005767756	No Hit
ACCGAATAGACCTGTTGCACCGGCAATTTCAAAATCAGGGATAGGACCGT	3511	0.10633580915160319	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTCACG	13870	65.07531	28
ACTCCAG	14210	63.671825	23
GTATGCC	14125	63.53365	47
GTCACGA	14220	63.42437	29
ACACGTC	14360	63.27005	13
GAACTCC	14300	63.222145	21
GCACACG	14390	63.21015	11
CAGTCAC	14325	63.106075	27
CTCCAGT	14350	62.95307	24
CATCTCG	13835	62.879196	41
TCGTATG	14280	62.745045	45
CACACGT	14495	62.70493	12
CACGTCT	14515	62.522083	14
TCCAGTC	14440	62.46375	25
CGAGATT	14430	62.455685	33
AGCACAC	14575	62.359802	10
CGTATGC	14425	62.211384	46
TGAACTC	14575	62.10131	20
CCAGTCA	14590	61.84555	26
GCCGTCT	14435	61.583572	51