[2024-04-21 09:52:51,581] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-04-21 09:52:51,581] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-04-21 09:52:51,582] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-04-21 09:52:51,584] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-04-21 09:52:51,584] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-04-21 09:52:51,584] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-04-21 09:52:51,605] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-04-21 09:52:51,605] multiqc [INFO ] This is MultiQC v1.9 [2024-04-21 09:52:51,605] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-04-21 09:52:51,605] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/5c/b84a3c36f1e0777b7a5855fae113e3/3 [2024-04-21 09:52:51,605] multiqc [INFO ] Template : default [2024-04-21 09:52:51,605] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-04-21 09:52:51,605] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/5c/b84a3c36f1e0777b7a5855fae113e3/3 [2024-04-21 09:52:51,605] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-04-21 09:52:51,605] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-45453562/tmp6_hz0is1 [2024-04-21 09:52:51,721] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n01_10G_1-14_NEB_fastqc.html [2024-04-21 09:52:51,729] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n01_10G_1-14_NEB_fastqc.html [2024-04-21 09:52:51,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_5G_1-15_NEB_fastqc.html [2024-04-21 09:53:03,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_5G_1-16_NEB_fastqc.html [2024-04-21 09:53:03,457] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_5G_1-16_NEB_fastqc.html [2024-04-21 09:53:03,525] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_5R_1-14_NEB_fastqc.html [2024-04-21 09:53:03,532] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_5R_1-14_NEB_fastqc.html [2024-04-21 09:53:03,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_5R_1-15_NEB_fastqc.html [2024-04-21 09:53:03,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_5R_1-15_NEB_fastqc.html [2024-04-21 09:53:03,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_5R_1-16_NEB_fastqc.html [2024-04-21 09:53:03,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_5R_1-16_NEB_fastqc.html [2024-04-21 09:53:03,746] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_5R_1-5_NEB_fastqc.html [2024-04-21 09:53:03,755] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_5R_1-5_NEB_fastqc.html [2024-04-21 09:53:03,825] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_6R_1-14_NEB_fastqc.html [2024-04-21 09:53:03,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_6R_1-14_NEB_fastqc.html [2024-04-21 09:53:03,898] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_6R_1-15_NEB_fastqc.html [2024-04-21 09:53:03,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_6R_1-15_NEB_fastqc.html [2024-04-21 09:53:03,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_6R_1-16_NEB_fastqc.html [2024-04-21 09:53:03,980] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_6R_1-16_NEB_fastqc.html [2024-04-21 09:53:04,050] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_6R_1-5_NEB_fastqc.html [2024-04-21 09:53:04,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_6R_1-5_NEB_fastqc.html [2024-04-21 09:53:04,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7G_1-14_NEB_fastqc.html [2024-04-21 09:53:04,138] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7G_1-14_NEB_fastqc.html [2024-04-21 09:53:04,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7G_1-15_NEB_fastqc.html [2024-04-21 09:53:04,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7G_1-15_NEB_fastqc.html [2024-04-21 09:53:04,279] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7G_1-16_NEB_fastqc.html [2024-04-21 09:53:04,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7G_1-16_NEB_fastqc.html [2024-04-21 09:53:04,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7R_1-14_NEB_fastqc.html [2024-04-21 09:53:04,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7R_1-14_NEB_fastqc.html [2024-04-21 09:53:04,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7R_1-15_NEB_fastqc.html [2024-04-21 09:53:04,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7R_1-15_NEB_fastqc.html [2024-04-21 09:53:04,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7R_1-16_NEB_fastqc.html [2024-04-21 09:53:04,513] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7R_1-16_NEB_fastqc.html [2024-04-21 09:53:04,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7R_1-5_NEB_fastqc.html [2024-04-21 09:53:04,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_7R_1-5_NEB_fastqc.html [2024-04-21 09:53:04,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8G_1-14_NEB_fastqc.html [2024-04-21 09:53:04,657] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8G_1-14_NEB_fastqc.html [2024-04-21 09:53:04,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8G_1-15_NEB_fastqc.html [2024-04-21 09:53:04,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8G_1-15_NEB_fastqc.html [2024-04-21 09:53:04,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8G_1-16_NEB_fastqc.html [2024-04-21 09:53:04,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8G_1-16_NEB_fastqc.html [2024-04-21 09:53:04,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8R_1-14_NEB_fastqc.html [2024-04-21 09:53:04,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8R_1-14_NEB_fastqc.html [2024-04-21 09:53:04,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8R_1-15_NEB_fastqc.html [2024-04-21 09:53:04,953] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8R_1-15_NEB_fastqc.html [2024-04-21 09:53:05,019] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8R_1-16_NEB_fastqc.html [2024-04-21 09:53:05,026] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8R_1-16_NEB_fastqc.html [2024-04-21 09:53:05,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8R_1-5_NEB_fastqc.html [2024-04-21 09:53:05,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_8R_1-5_NEB_fastqc.html [2024-04-21 09:53:05,173] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9G_1-14_NEB_fastqc.html [2024-04-21 09:53:05,179] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9G_1-14_NEB_fastqc.html [2024-04-21 09:53:05,243] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9G_1-15_NEB_fastqc.html [2024-04-21 09:53:05,249] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9G_1-15_NEB_fastqc.html [2024-04-21 09:53:05,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9G_1-16_NEB_fastqc.html [2024-04-21 09:53:05,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9G_1-16_NEB_fastqc.html [2024-04-21 09:53:05,384] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9R_1-14_NEB_fastqc.html [2024-04-21 09:53:05,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9R_1-14_NEB_fastqc.html [2024-04-21 09:53:05,455] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9R_1-15_NEB_fastqc.html [2024-04-21 09:53:05,462] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9R_1-15_NEB_fastqc.html [2024-04-21 09:53:05,527] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9R_1-16_NEB_fastqc.html [2024-04-21 09:53:05,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9R_1-16_NEB_fastqc.html [2024-04-21 09:53:05,606] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9R_1-5_NEB_fastqc.html [2024-04-21 09:53:05,613] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_9R_1-5_NEB_fastqc.html [2024-04-21 09:53:05,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_undetermined_fastqc.html [2024-04-21 09:53:05,688] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l03_n02_undetermined_fastqc.html [2024-04-21 09:53:05,749] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 09:53:05,755] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 09:53:05,756] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 09:53:05,756] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 09:53:05,756] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 09:53:05,756] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 09:53:05,756] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 09:53:05,781] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 09:53:07,049] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-04-21 09:53:07,050] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-04-21 09:53:07,101] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 94 samples (table) [2024-04-21 09:53:07,103] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-04-21 09:53:07,112] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-04-21 09:53:07,115] multiqc [DEBUG ] No samples found: conpair [2024-04-21 09:53:07,118] multiqc [DEBUG ] No samples found: peddy [2024-04-21 09:53:07,121] multiqc [DEBUG ] No samples found: somalier [2024-04-21 09:53:07,124] multiqc [DEBUG ] No samples found: methylQA [2024-04-21 09:53:07,128] multiqc [DEBUG ] No samples found: mosdepth [2024-04-21 09:53:07,131] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-04-21 09:53:07,133] multiqc [DEBUG ] No samples found: qualimap [2024-04-21 09:53:07,136] multiqc [DEBUG ] No samples found: preseq [2024-04-21 09:53:07,139] multiqc [DEBUG ] No samples found: quast [2024-04-21 09:53:07,142] multiqc [DEBUG ] No samples found: qorts [2024-04-21 09:53:07,154] multiqc [DEBUG ] No samples found: rna_seqc [2024-04-21 09:53:07,157] multiqc [DEBUG ] No samples found: rockhopper [2024-04-21 09:53:07,160] multiqc [DEBUG ] No samples found: rsem [2024-04-21 09:53:07,165] multiqc [DEBUG ] No samples found: rseqc [2024-04-21 09:53:07,167] multiqc [DEBUG ] No samples found: busco [2024-04-21 09:53:07,170] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-04-21 09:53:07,173] multiqc [DEBUG ] No samples found: disambiguate [2024-04-21 09:53:07,177] multiqc [DEBUG ] No samples found: supernova [2024-04-21 09:53:07,182] multiqc [DEBUG ] No samples found: deeptools [2024-04-21 09:53:07,184] multiqc [DEBUG ] No samples found: sargasso [2024-04-21 09:53:07,187] multiqc [DEBUG ] No samples found: verifybamid [2024-04-21 09:53:07,190] multiqc [DEBUG ] No samples found: mirtrace [2024-04-21 09:53:07,193] multiqc [DEBUG ] No samples found: happy [2024-04-21 09:53:07,195] multiqc [DEBUG ] No samples found: mirtop [2024-04-21 09:53:07,199] multiqc [DEBUG ] No samples found: homer [2024-04-21 09:53:07,202] multiqc [DEBUG ] No samples found: macs2 [2024-04-21 09:53:07,205] multiqc [DEBUG ] No samples found: theta2 [2024-04-21 09:53:07,207] multiqc [DEBUG ] No samples found: snpeff [2024-04-21 09:53:07,211] multiqc [DEBUG ] No samples found: gatk [2024-04-21 09:53:07,213] multiqc [DEBUG ] No samples found: htseq [2024-04-21 09:53:07,216] multiqc [DEBUG ] No samples found: bcftools [2024-04-21 09:53:07,219] multiqc [DEBUG ] No samples found: featureCounts [2024-04-21 09:53:07,222] multiqc [DEBUG ] No samples found: fgbio [2024-04-21 09:53:07,227] multiqc [DEBUG ] No samples found: dragen [2024-04-21 09:53:07,230] multiqc [DEBUG ] No samples found: dedup [2024-04-21 09:53:07,236] multiqc [DEBUG ] No samples found: damageprofiler [2024-04-21 09:53:07,244] multiqc [DEBUG ] No samples found: biobambam2 [2024-04-21 09:53:07,246] multiqc [DEBUG ] No samples found: mtnucratio [2024-04-21 09:53:07,249] multiqc [DEBUG ] No samples found: picard [2024-04-21 09:53:07,253] multiqc [DEBUG ] No samples found: prokka [2024-04-21 09:53:07,255] multiqc [DEBUG ] No samples found: samblaster [2024-04-21 09:53:07,261] multiqc [DEBUG ] No samples found: samtools [2024-04-21 09:53:07,264] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-04-21 09:53:07,266] multiqc [DEBUG ] No samples found: bamtools [2024-04-21 09:53:07,269] multiqc [DEBUG ] No samples found: jellyfish [2024-04-21 09:53:07,273] multiqc [DEBUG ] No samples found: vcftools [2024-04-21 09:53:07,276] multiqc [DEBUG ] No samples found: longranger [2024-04-21 09:53:07,278] multiqc [DEBUG ] No samples found: stacks [2024-04-21 09:53:07,281] multiqc [DEBUG ] No samples found: varscan2 [2024-04-21 09:53:07,288] multiqc [DEBUG ] No samples found: bbmap [2024-04-21 09:53:07,292] multiqc [DEBUG ] No samples found: bismark [2024-04-21 09:53:07,295] multiqc [DEBUG ] No samples found: biscuit [2024-04-21 09:53:07,297] multiqc [DEBUG ] No samples found: hicexplorer [2024-04-21 09:53:07,300] multiqc [DEBUG ] No samples found: hicup [2024-04-21 09:53:07,303] multiqc [DEBUG ] No samples found: hicpro [2024-04-21 09:53:07,305] multiqc [DEBUG ] No samples found: salmon [2024-04-21 09:53:07,308] multiqc [DEBUG ] No samples found: kallisto [2024-04-21 09:53:07,313] multiqc [DEBUG ] No samples found: slamdunk [2024-04-21 09:53:07,316] multiqc [DEBUG ] No samples found: star [2024-04-21 09:53:07,319] multiqc [DEBUG ] No samples found: hisat2 [2024-04-21 09:53:07,321] multiqc [DEBUG ] No samples found: tophat [2024-04-21 09:53:07,324] multiqc [DEBUG ] No samples found: bowtie2 [2024-04-21 09:53:07,327] multiqc [DEBUG ] No samples found: bowtie1 [2024-04-21 09:53:07,331] multiqc [DEBUG ] No samples found: snpsplit [2024-04-21 09:53:07,333] multiqc [DEBUG ] No samples found: kat [2024-04-21 09:53:07,336] multiqc [DEBUG ] No samples found: leehom [2024-04-21 09:53:07,339] multiqc [DEBUG ] No samples found: adapterRemoval [2024-04-21 09:53:07,341] multiqc [DEBUG ] No samples found: clipandmerge [2024-04-21 09:53:07,344] multiqc [DEBUG ] No samples found: cutadapt [2024-04-21 09:53:07,347] multiqc [DEBUG ] No samples found: flexbar [2024-04-21 09:53:07,349] multiqc [DEBUG ] No samples found: kaiju [2024-04-21 09:53:07,352] multiqc [DEBUG ] No samples found: kraken [2024-04-21 09:53:07,355] multiqc [DEBUG ] No samples found: malt [2024-04-21 09:53:07,357] multiqc [DEBUG ] No samples found: trimmomatic [2024-04-21 09:53:07,360] multiqc [DEBUG ] No samples found: sickle [2024-04-21 09:53:07,363] multiqc [DEBUG ] No samples found: skewer [2024-04-21 09:53:07,365] multiqc [DEBUG ] No samples found: sortmerna [2024-04-21 09:53:07,368] multiqc [DEBUG ] No samples found: biobloomtools [2024-04-21 09:53:07,371] multiqc [DEBUG ] No samples found: fastq_screen [2024-04-21 09:53:07,373] multiqc [DEBUG ] No samples found: afterqc [2024-04-21 09:53:07,376] multiqc [DEBUG ] No samples found: fastp [2024-04-21 09:53:43,484] multiqc.modules.fastqc.fastqc [INFO ] Found 188 reports [2024-04-21 09:54:06,552] multiqc [DEBUG ] No samples found: pycoqc [2024-04-21 09:54:06,555] multiqc [DEBUG ] No samples found: minionqc [2024-04-21 09:54:06,558] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-04-21 09:54:06,561] multiqc [DEBUG ] No samples found: clusterflow [2024-04-21 09:54:06,563] multiqc [DEBUG ] No samples found: bcl2fastq [2024-04-21 09:54:06,566] multiqc [DEBUG ] No samples found: interop [2024-04-21 09:54:06,569] multiqc [DEBUG ] No samples found: ivar [2024-04-21 09:54:06,572] multiqc [DEBUG ] No samples found: flash [2024-04-21 09:54:06,574] multiqc [DEBUG ] No samples found: seqyclean [2024-04-21 09:54:06,574] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-04-21 09:54:06,574] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-04-21 09:54:06,574] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-04-21 09:54:06,574] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-04-21 09:54:06,574] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-04-21 09:54:06,575] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-04-21 09:54:06,794] multiqc [INFO ] Compressing plot data [2024-04-21 09:54:06,888] multiqc [INFO ] Report : multiqc_report.html [2024-04-21 09:54:06,888] multiqc [INFO ] Data : multiqc_data [2024-04-21 09:54:06,888] multiqc [DEBUG ] Moving data file from '/state/partition1/job-45453562/tmp6_hz0is1/multiqc_data' to '/vast/gencore/GENEFLOW/work/5c/b84a3c36f1e0777b7a5855fae113e3/3/multiqc_data' [2024-04-21 09:54:07,106] multiqc [INFO ] MultiQC complete