[2024-04-21 10:11:24,680] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-04-21 10:11:24,680] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-04-21 10:11:24,680] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-04-21 10:11:24,683] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-04-21 10:11:24,683] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-04-21 10:11:24,683] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-04-21 10:11:24,713] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-04-21 10:11:24,713] multiqc [INFO ] This is MultiQC v1.9 [2024-04-21 10:11:24,713] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-04-21 10:11:24,713] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/90/991d35370f50ccfbbfe33747375bea/1 [2024-04-21 10:11:24,714] multiqc [INFO ] Template : default [2024-04-21 10:11:24,714] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-04-21 10:11:24,714] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/90/991d35370f50ccfbbfe33747375bea/1 [2024-04-21 10:11:24,714] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-04-21 10:11:24,714] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-45453772/tmpltdgz6lf [2024-04-21 10:11:24,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n01_10G_1-10_NEB_fastqc.html [2024-04-21 10:11:24,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n01_10G_1-10_NEB_fastqc.html [2024-04-21 10:11:24,904] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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[2024-04-21 10:11:36,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_5G_1-5_NEB_fastqc.html [2024-04-21 10:11:36,336] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_5G_1-9_NEB_fastqc.html [2024-04-21 10:11:36,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_5G_1-9_NEB_fastqc.html [2024-04-21 10:11:36,413] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_5R_1-10_NEB_fastqc.html [2024-04-21 10:11:36,420] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_5R_1-10_NEB_fastqc.html [2024-04-21 10:11:36,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_5R_1-1_NEB_fastqc.html [2024-04-21 10:11:36,493] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_5R_1-1_NEB_fastqc.html [2024-04-21 10:11:36,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_5R_1-9_NEB_fastqc.html [2024-04-21 10:11:36,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_5R_1-9_NEB_fastqc.html [2024-04-21 10:11:36,631] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_6R_1-10_NEB_fastqc.html [2024-04-21 10:11:36,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_6R_1-10_NEB_fastqc.html [2024-04-21 10:11:36,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_6R_1-1_NEB_fastqc.html [2024-04-21 10:11:36,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_6R_1-1_NEB_fastqc.html [2024-04-21 10:11:36,772] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_6R_1-9_NEB_fastqc.html [2024-04-21 10:11:36,778] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_6R_1-9_NEB_fastqc.html [2024-04-21 10:11:36,842] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7G_1-10_NEB_fastqc.html [2024-04-21 10:11:36,850] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7G_1-10_NEB_fastqc.html [2024-04-21 10:11:36,920] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7G_1-1_NEB_fastqc.html [2024-04-21 10:11:36,927] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7G_1-1_NEB_fastqc.html [2024-04-21 10:11:36,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7G_1-5_NEB_fastqc.html [2024-04-21 10:11:37,000] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7G_1-5_NEB_fastqc.html [2024-04-21 10:11:37,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7G_1-9_NEB_fastqc.html [2024-04-21 10:11:37,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7G_1-9_NEB_fastqc.html [2024-04-21 10:11:37,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7R_1-10_NEB_fastqc.html [2024-04-21 10:11:37,145] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7R_1-10_NEB_fastqc.html [2024-04-21 10:11:37,212] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7R_1-1_NEB_fastqc.html [2024-04-21 10:11:37,219] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7R_1-1_NEB_fastqc.html [2024-04-21 10:11:37,289] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7R_1-9_NEB_fastqc.html [2024-04-21 10:11:37,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_7R_1-9_NEB_fastqc.html [2024-04-21 10:11:37,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8G_1-10_NEB_fastqc.html [2024-04-21 10:11:37,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8G_1-10_NEB_fastqc.html [2024-04-21 10:11:37,438] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8G_1-1_NEB_fastqc.html [2024-04-21 10:11:37,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8G_1-1_NEB_fastqc.html [2024-04-21 10:11:37,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8G_1-5_NEB_fastqc.html [2024-04-21 10:11:37,525] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8G_1-5_NEB_fastqc.html [2024-04-21 10:11:37,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8G_1-9_NEB_fastqc.html [2024-04-21 10:11:37,597] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8G_1-9_NEB_fastqc.html [2024-04-21 10:11:37,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8R_1-10_NEB_fastqc.html [2024-04-21 10:11:37,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8R_1-10_NEB_fastqc.html [2024-04-21 10:11:37,738] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8R_1-1_NEB_fastqc.html [2024-04-21 10:11:37,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8R_1-1_NEB_fastqc.html [2024-04-21 10:11:37,813] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8R_1-9_NEB_fastqc.html [2024-04-21 10:11:37,820] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_8R_1-9_NEB_fastqc.html [2024-04-21 10:11:37,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9G_1-10_NEB_fastqc.html [2024-04-21 10:11:37,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9G_1-10_NEB_fastqc.html [2024-04-21 10:11:37,957] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9G_1-1_NEB_fastqc.html [2024-04-21 10:11:37,964] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9G_1-1_NEB_fastqc.html [2024-04-21 10:11:38,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9G_1-5_NEB_fastqc.html [2024-04-21 10:11:38,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9G_1-5_NEB_fastqc.html [2024-04-21 10:11:38,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9G_1-9_NEB_fastqc.html [2024-04-21 10:11:38,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9G_1-9_NEB_fastqc.html [2024-04-21 10:11:38,192] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9R_1-10_NEB_fastqc.html [2024-04-21 10:11:38,198] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9R_1-10_NEB_fastqc.html [2024-04-21 10:11:38,265] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9R_1-1_NEB_fastqc.html [2024-04-21 10:11:38,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9R_1-1_NEB_fastqc.html [2024-04-21 10:11:38,340] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9R_1-9_NEB_fastqc.html [2024-04-21 10:11:38,348] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_9R_1-9_NEB_fastqc.html [2024-04-21 10:11:38,417] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_undetermined_fastqc.html [2024-04-21 10:11:38,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3WG2DSXC_l01_n02_undetermined_fastqc.html [2024-04-21 10:11:38,485] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 10:11:38,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 10:11:38,492] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 10:11:38,492] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 10:11:38,492] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 10:11:38,492] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 10:11:38,492] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2024-04-21 10:11:39,789] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-04-21 10:11:39,790] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-04-21 10:11:39,840] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 92 samples (table) [2024-04-21 10:11:39,842] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-04-21 10:11:39,852] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-04-21 10:11:39,855] multiqc [DEBUG ] No samples found: conpair [2024-04-21 10:11:39,858] multiqc [DEBUG ] No samples found: peddy [2024-04-21 10:11:39,860] multiqc [DEBUG ] No samples found: somalier [2024-04-21 10:11:39,863] multiqc [DEBUG ] No samples found: methylQA [2024-04-21 10:11:39,867] multiqc [DEBUG ] No samples found: mosdepth [2024-04-21 10:11:39,870] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-04-21 10:11:39,872] multiqc [DEBUG ] No samples found: qualimap [2024-04-21 10:11:39,875] multiqc [DEBUG ] No samples found: preseq [2024-04-21 10:11:39,878] multiqc [DEBUG ] No samples found: quast [2024-04-21 10:11:39,880] multiqc [DEBUG ] No samples found: qorts [2024-04-21 10:11:39,883] multiqc [DEBUG ] No samples found: rna_seqc [2024-04-21 10:11:39,886] multiqc [DEBUG ] No samples found: rockhopper [2024-04-21 10:11:39,889] multiqc [DEBUG ] No samples found: rsem [2024-04-21 10:11:39,893] multiqc [DEBUG ] No samples found: rseqc [2024-04-21 10:11:39,896] multiqc [DEBUG ] No samples found: busco [2024-04-21 10:11:39,899] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-04-21 10:11:39,902] multiqc [DEBUG ] No samples found: disambiguate [2024-04-21 10:11:39,904] multiqc [DEBUG ] No samples found: supernova [2024-04-21 10:11:39,909] multiqc [DEBUG ] No samples found: deeptools [2024-04-21 10:11:39,912] multiqc [DEBUG ] No samples found: sargasso [2024-04-21 10:11:39,915] multiqc [DEBUG ] No samples found: verifybamid [2024-04-21 10:11:39,917] multiqc [DEBUG ] No samples found: mirtrace [2024-04-21 10:11:39,920] multiqc [DEBUG ] No samples found: happy [2024-04-21 10:11:39,923] multiqc [DEBUG ] No samples found: mirtop [2024-04-21 10:11:39,927] multiqc [DEBUG ] No samples found: homer [2024-04-21 10:11:39,929] multiqc [DEBUG ] No samples found: macs2 [2024-04-21 10:11:39,932] multiqc [DEBUG ] No samples found: theta2 [2024-04-21 10:11:39,935] multiqc [DEBUG ] No samples found: snpeff [2024-04-21 10:11:39,938] multiqc [DEBUG ] No samples found: gatk [2024-04-21 10:11:39,941] multiqc [DEBUG ] No samples found: htseq [2024-04-21 10:11:39,944] multiqc [DEBUG ] No samples found: bcftools [2024-04-21 10:11:39,946] multiqc [DEBUG ] No samples found: featureCounts [2024-04-21 10:11:39,950] multiqc [DEBUG ] No samples found: fgbio [2024-04-21 10:11:39,955] multiqc [DEBUG ] No samples found: dragen [2024-04-21 10:11:39,957] multiqc [DEBUG ] No samples found: dedup [2024-04-21 10:11:39,960] multiqc [DEBUG ] No samples found: damageprofiler [2024-04-21 10:11:39,968] multiqc [DEBUG ] No samples found: biobambam2 [2024-04-21 10:11:39,971] multiqc [DEBUG ] No samples found: mtnucratio [2024-04-21 10:11:39,973] multiqc [DEBUG ] No samples found: picard [2024-04-21 10:11:39,976] multiqc [DEBUG ] No samples found: prokka [2024-04-21 10:11:39,978] multiqc [DEBUG ] No samples found: samblaster [2024-04-21 10:11:39,982] multiqc [DEBUG ] No samples found: samtools [2024-04-21 10:11:39,985] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-04-21 10:11:39,988] multiqc [DEBUG ] No samples found: bamtools [2024-04-21 10:11:39,990] multiqc [DEBUG ] No samples found: jellyfish [2024-04-21 10:11:39,994] multiqc [DEBUG ] No samples found: vcftools [2024-04-21 10:11:39,997] multiqc [DEBUG ] No samples found: longranger [2024-04-21 10:11:39,999] multiqc [DEBUG ] No samples found: stacks [2024-04-21 10:11:40,002] multiqc [DEBUG ] No samples found: varscan2 [2024-04-21 10:11:40,007] multiqc [DEBUG ] No samples found: bbmap [2024-04-21 10:11:40,010] multiqc [DEBUG ] No samples found: bismark [2024-04-21 10:11:40,013] multiqc [DEBUG ] No samples found: biscuit [2024-04-21 10:11:40,016] multiqc [DEBUG ] No samples found: hicexplorer [2024-04-21 10:11:40,018] multiqc [DEBUG ] No samples found: hicup [2024-04-21 10:11:40,021] multiqc [DEBUG ] No samples found: hicpro [2024-04-21 10:11:40,024] multiqc [DEBUG ] No samples found: salmon [2024-04-21 10:11:40,027] multiqc [DEBUG ] No samples found: kallisto [2024-04-21 10:11:40,030] multiqc [DEBUG ] No samples found: slamdunk [2024-04-21 10:11:40,032] multiqc [DEBUG ] No samples found: star [2024-04-21 10:11:40,035] multiqc [DEBUG ] No samples found: hisat2 [2024-04-21 10:11:40,038] multiqc [DEBUG ] No samples found: tophat [2024-04-21 10:11:40,040] multiqc [DEBUG ] No samples found: bowtie2 [2024-04-21 10:11:40,043] multiqc [DEBUG ] No samples found: bowtie1 [2024-04-21 10:11:40,046] multiqc [DEBUG ] No samples found: snpsplit [2024-04-21 10:11:40,049] multiqc [DEBUG ] No samples found: kat [2024-04-21 10:11:40,051] multiqc [DEBUG ] No samples found: leehom [2024-04-21 10:11:40,054] multiqc [DEBUG ] No samples found: adapterRemoval [2024-04-21 10:11:40,057] multiqc [DEBUG ] No samples found: clipandmerge [2024-04-21 10:11:40,059] multiqc [DEBUG ] No samples found: cutadapt [2024-04-21 10:11:40,062] multiqc [DEBUG ] No samples found: flexbar [2024-04-21 10:11:40,065] multiqc [DEBUG ] No samples found: kaiju [2024-04-21 10:11:40,068] multiqc [DEBUG ] No samples found: kraken [2024-04-21 10:11:40,070] multiqc [DEBUG ] No samples found: malt [2024-04-21 10:11:40,073] multiqc [DEBUG ] No samples found: trimmomatic [2024-04-21 10:11:40,076] multiqc [DEBUG ] No samples found: sickle [2024-04-21 10:11:40,078] multiqc [DEBUG ] No samples found: skewer [2024-04-21 10:11:40,081] multiqc [DEBUG ] No samples found: sortmerna [2024-04-21 10:11:40,084] multiqc [DEBUG ] No samples found: biobloomtools [2024-04-21 10:11:40,086] multiqc [DEBUG ] No samples found: fastq_screen [2024-04-21 10:11:40,089] multiqc [DEBUG ] No samples found: afterqc [2024-04-21 10:11:40,092] multiqc [DEBUG ] No samples found: fastp [2024-04-21 10:12:15,768] multiqc.modules.fastqc.fastqc [INFO ] Found 184 reports [2024-04-21 10:12:37,963] multiqc [DEBUG ] No samples found: pycoqc [2024-04-21 10:12:37,966] multiqc [DEBUG ] No samples found: minionqc [2024-04-21 10:12:37,969] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-04-21 10:12:37,972] multiqc [DEBUG ] No samples found: clusterflow [2024-04-21 10:12:37,974] multiqc [DEBUG ] No samples found: bcl2fastq [2024-04-21 10:12:37,977] multiqc [DEBUG ] No samples found: interop [2024-04-21 10:12:37,980] multiqc [DEBUG ] No samples found: ivar [2024-04-21 10:12:37,983] multiqc [DEBUG ] No samples found: flash [2024-04-21 10:12:37,985] multiqc [DEBUG ] No samples found: seqyclean [2024-04-21 10:12:37,985] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-04-21 10:12:37,986] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-04-21 10:12:38,200] multiqc [INFO ] Compressing plot data [2024-04-21 10:12:38,292] multiqc [INFO ] Report : multiqc_report.html [2024-04-21 10:12:38,292] multiqc [INFO ] Data : multiqc_data [2024-04-21 10:12:38,292] multiqc [DEBUG ] Moving data file from '/state/partition1/job-45453772/tmpltdgz6lf/multiqc_data' to '/vast/gencore/GENEFLOW/work/90/991d35370f50ccfbbfe33747375bea/1/multiqc_data' [2024-04-21 10:12:38,499] multiqc [INFO ] MultiQC complete