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MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

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About MultiQC

This report was generated using MultiQC, version 1.0.dev0

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MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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Report generated on 2018-07-26, 07:07 based on data in: /mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/H3W35AFXY/merged

General Statistics

Showing ¹⁹²/₁₉₂ rows and ³/₅ columns.

Sample Name	% Dups	% GC	Length	% Failed	M Seqs
H3W35AFXY_n01_adr3wtzt14s1	13.5%	52%	76 bp	17%	0.1
H3W35AFXY_n01_adr3wtzt14s10	28.8%	52%	76 bp	25%	0.3
H3W35AFXY_n01_adr3wtzt14s11	41.7%	53%	76 bp	25%	0.4
H3W35AFXY_n01_adr3wtzt14s12	41.6%	55%	76 bp	25%	0.4
H3W35AFXY_n01_adr3wtzt14s13	50.6%	52%	76 bp	25%	0.5
H3W35AFXY_n01_adr3wtzt14s14	37.5%	53%	76 bp	25%	0.4
H3W35AFXY_n01_adr3wtzt14s15	35.3%	55%	76 bp	25%	0.3
H3W35AFXY_n01_adr3wtzt14s16	18.2%	49%	76 bp	33%	0.1
H3W35AFXY_n01_adr3wtzt14s17	35.6%	46%	76 bp	25%	0.0
H3W35AFXY_n01_adr3wtzt14s18	40.5%	54%	76 bp	25%	0.3
H3W35AFXY_n01_adr3wtzt14s19	36.2%	55%	76 bp	25%	0.4
H3W35AFXY_n01_adr3wtzt14s2	31.1%	53%	76 bp	25%	0.1
H3W35AFXY_n01_adr3wtzt14s20	25.8%	55%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s21	45.8%	53%	76 bp	25%	0.3
H3W35AFXY_n01_adr3wtzt14s22	28.7%	52%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s23	21.5%	53%	76 bp	25%	0.1
H3W35AFXY_n01_adr3wtzt14s24	58.1%	48%	76 bp	25%	0.3
H3W35AFXY_n01_adr3wtzt14s25	50.0%	56%	76 bp	42%	0.0
H3W35AFXY_n01_adr3wtzt14s26	32.9%	51%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s27	29.2%	51%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s28	32.2%	53%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s29	41.5%	49%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s3	46.5%	54%	76 bp	25%	0.6
H3W35AFXY_n01_adr3wtzt14s30	35.8%	50%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s31	21.1%	54%	76 bp	17%	0.1
H3W35AFXY_n01_adr3wtzt14s32	46.2%	47%	76 bp	17%	0.3
H3W35AFXY_n01_adr3wtzt14s33	23.0%	51%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s34	38.6%	50%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s35	25.6%	52%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s36	26.8%	52%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s37	24.7%	53%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s38	39.2%	51%	76 bp	17%	0.3
H3W35AFXY_n01_adr3wtzt14s39	16.1%	54%	76 bp	17%	0.1
H3W35AFXY_n01_adr3wtzt14s4	48.9%	56%	76 bp	33%	0.5
H3W35AFXY_n01_adr3wtzt14s40	35.0%	52%	76 bp	17%	0.3
H3W35AFXY_n01_adr3wtzt14s41	22.5%	55%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s42	18.2%	55%	76 bp	17%	0.1
H3W35AFXY_n01_adr3wtzt14s43	31.8%	50%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s44	18.3%	54%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s45	21.8%	56%	76 bp	17%	0.1
H3W35AFXY_n01_adr3wtzt14s46	19.5%	54%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s47	41.8%	48%	76 bp	25%	0.1
H3W35AFXY_n01_adr3wtzt14s48	32.9%	51%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s49	29.0%	53%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s5	50.7%	55%	76 bp	33%	0.7
H3W35AFXY_n01_adr3wtzt14s50	17.5%	55%	76 bp	17%	0.1
H3W35AFXY_n01_adr3wtzt14s51	46.4%	49%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s52	25.3%	53%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s53	48.0%	47%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s54	18.9%	54%	76 bp	17%	0.1
H3W35AFXY_n01_adr3wtzt14s55	34.9%	50%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s56	27.8%	54%	76 bp	17%	0.3
H3W35AFXY_n01_adr3wtzt14s57	27.3%	51%	76 bp	25%	0.1
H3W35AFXY_n01_adr3wtzt14s58	20.6%	52%	76 bp	17%	0.1
H3W35AFXY_n01_adr3wtzt14s59	25.0%	55%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s6	37.0%	54%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s60	26.4%	57%	76 bp	17%	0.3
H3W35AFXY_n01_adr3wtzt14s61	29.2%	52%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s62	27.4%	53%	76 bp	25%	0.1
H3W35AFXY_n01_adr3wtzt14s63	20.0%	53%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s64	35.0%	51%	76 bp	17%	0.3
H3W35AFXY_n01_adr3wtzt14s65	25.8%	51%	76 bp	17%	0.1
H3W35AFXY_n01_adr3wtzt14s66	18.1%	52%	76 bp	17%	0.1
H3W35AFXY_n01_adr3wtzt14s67	26.5%	53%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s68	29.8%	55%	76 bp	17%	0.3
H3W35AFXY_n01_adr3wtzt14s69	28.5%	54%	76 bp	17%	0.1
H3W35AFXY_n01_adr3wtzt14s7	20.0%	55%	76 bp	25%	0.1
H3W35AFXY_n01_adr3wtzt14s70	25.7%	54%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s71	30.0%	50%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s72	33.4%	52%	76 bp	17%	0.4
H3W35AFXY_n01_adr3wtzt14s73	30.3%	53%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s74	23.9%	53%	76 bp	25%	0.1
H3W35AFXY_n01_adr3wtzt14s75	33.3%	53%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s76	30.9%	51%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s77	31.4%	52%	76 bp	25%	0.1
H3W35AFXY_n01_adr3wtzt14s78	26.4%	52%	76 bp	25%	0.2
H3W35AFXY_n01_adr3wtzt14s79	18.5%	54%	76 bp	17%	0.1
H3W35AFXY_n01_adr3wtzt14s8	24.6%	56%	76 bp	33%	0.0
H3W35AFXY_n01_adr3wtzt14s80	38.1%	51%	76 bp	17%	0.3
H3W35AFXY_n01_adr3wtzt14s81	29.2%	50%	76 bp	25%	0.3
H3W35AFXY_n01_adr3wtzt14s82	35.6%	52%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s83	33.3%	51%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s84	42.1%	51%	76 bp	25%	0.3
H3W35AFXY_n01_adr3wtzt14s85	26.6%	56%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s86	27.8%	54%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s87	48.4%	50%	76 bp	17%	0.4
H3W35AFXY_n01_adr3wtzt14s88	30.8%	53%	76 bp	25%	0.1
H3W35AFXY_n01_adr3wtzt14s89	51.4%	46%	76 bp	33%	0.2
H3W35AFXY_n01_adr3wtzt14s9	26.2%	53%	76 bp	17%	0.4
H3W35AFXY_n01_adr3wtzt14s90	25.1%	55%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s91	19.5%	52%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s92	21.3%	55%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s93	37.3%	53%	76 bp	17%	0.3
H3W35AFXY_n01_adr3wtzt14s94	26.5%	53%	76 bp	17%	0.2
H3W35AFXY_n01_adr3wtzt14s95	27.8%	56%	76 bp	17%	0.3
H3W35AFXY_n01_adr3wtzt14s96	2.1%	49%	76 bp	50%	0.0
H3W35AFXY_n02_adr3wtzt14s1	13.1%	52%	76 bp	17%	0.1
H3W35AFXY_n02_adr3wtzt14s10	27.7%	51%	76 bp	17%	0.3
H3W35AFXY_n02_adr3wtzt14s11	40.7%	53%	76 bp	25%	0.4
H3W35AFXY_n02_adr3wtzt14s12	39.9%	54%	76 bp	25%	0.4
H3W35AFXY_n02_adr3wtzt14s13	50.2%	52%	76 bp	25%	0.5
H3W35AFXY_n02_adr3wtzt14s14	36.4%	53%	76 bp	17%	0.4
H3W35AFXY_n02_adr3wtzt14s15	33.6%	55%	76 bp	33%	0.3
H3W35AFXY_n02_adr3wtzt14s16	17.0%	48%	76 bp	25%	0.1
H3W35AFXY_n02_adr3wtzt14s17	34.6%	48%	76 bp	33%	0.0
H3W35AFXY_n02_adr3wtzt14s18	38.5%	54%	76 bp	17%	0.3
H3W35AFXY_n02_adr3wtzt14s19	34.7%	54%	76 bp	25%	0.4
H3W35AFXY_n02_adr3wtzt14s2	29.2%	52%	76 bp	25%	0.1
H3W35AFXY_n02_adr3wtzt14s20	25.4%	55%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s21	43.8%	52%	76 bp	25%	0.3
H3W35AFXY_n02_adr3wtzt14s22	27.9%	51%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s23	19.8%	53%	76 bp	25%	0.1
H3W35AFXY_n02_adr3wtzt14s24	57.5%	48%	76 bp	33%	0.3
H3W35AFXY_n02_adr3wtzt14s25	51.2%	78%	76 bp	33%	0.0
H3W35AFXY_n02_adr3wtzt14s26	32.0%	51%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s27	27.7%	51%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s28	31.8%	53%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s29	41.3%	49%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s3	45.4%	53%	76 bp	33%	0.6
H3W35AFXY_n02_adr3wtzt14s30	35.3%	50%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s31	20.4%	54%	76 bp	25%	0.1
H3W35AFXY_n02_adr3wtzt14s32	45.7%	47%	76 bp	33%	0.3
H3W35AFXY_n02_adr3wtzt14s33	22.3%	51%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s34	37.1%	50%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s35	24.2%	52%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s36	25.3%	52%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s37	23.5%	52%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s38	39.0%	51%	76 bp	25%	0.3
H3W35AFXY_n02_adr3wtzt14s39	16.3%	54%	76 bp	25%	0.1
H3W35AFXY_n02_adr3wtzt14s4	47.4%	56%	76 bp	25%	0.5
H3W35AFXY_n02_adr3wtzt14s40	34.5%	52%	76 bp	17%	0.3
H3W35AFXY_n02_adr3wtzt14s41	21.9%	54%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s42	18.2%	55%	76 bp	17%	0.1
H3W35AFXY_n02_adr3wtzt14s43	30.6%	50%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s44	17.4%	54%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s45	20.3%	56%	76 bp	17%	0.1
H3W35AFXY_n02_adr3wtzt14s46	18.6%	54%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s47	41.1%	48%	76 bp	25%	0.1
H3W35AFXY_n02_adr3wtzt14s48	33.0%	51%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s49	28.7%	53%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s5	49.9%	54%	76 bp	33%	0.7
H3W35AFXY_n02_adr3wtzt14s50	17.1%	55%	76 bp	25%	0.1
H3W35AFXY_n02_adr3wtzt14s51	45.8%	49%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s52	24.6%	53%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s53	47.3%	47%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s54	17.7%	54%	76 bp	25%	0.1
H3W35AFXY_n02_adr3wtzt14s55	34.0%	50%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s56	28.2%	55%	76 bp	17%	0.3
H3W35AFXY_n02_adr3wtzt14s57	26.8%	51%	76 bp	25%	0.1
H3W35AFXY_n02_adr3wtzt14s58	20.0%	52%	76 bp	17%	0.1
H3W35AFXY_n02_adr3wtzt14s59	23.0%	55%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s6	34.5%	53%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s60	25.1%	56%	76 bp	25%	0.3
H3W35AFXY_n02_adr3wtzt14s61	28.9%	52%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s62	25.6%	53%	76 bp	17%	0.1
H3W35AFXY_n02_adr3wtzt14s63	20.1%	53%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s64	34.5%	51%	76 bp	17%	0.3
H3W35AFXY_n02_adr3wtzt14s65	25.2%	51%	76 bp	17%	0.1
H3W35AFXY_n02_adr3wtzt14s66	17.1%	52%	76 bp	17%	0.1
H3W35AFXY_n02_adr3wtzt14s67	25.6%	53%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s68	28.8%	55%	76 bp	17%	0.3
H3W35AFXY_n02_adr3wtzt14s69	27.6%	54%	76 bp	17%	0.1
H3W35AFXY_n02_adr3wtzt14s7	18.3%	55%	76 bp	25%	0.1
H3W35AFXY_n02_adr3wtzt14s70	25.4%	54%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s71	29.2%	50%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s72	33.2%	52%	76 bp	25%	0.4
H3W35AFXY_n02_adr3wtzt14s73	28.8%	52%	76 bp	33%	0.2
H3W35AFXY_n02_adr3wtzt14s74	23.0%	52%	76 bp	17%	0.1
H3W35AFXY_n02_adr3wtzt14s75	32.4%	53%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s76	31.2%	51%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s77	30.7%	52%	76 bp	25%	0.1
H3W35AFXY_n02_adr3wtzt14s78	25.2%	52%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s79	17.1%	54%	76 bp	17%	0.1
H3W35AFXY_n02_adr3wtzt14s8	22.2%	56%	76 bp	42%	0.0
H3W35AFXY_n02_adr3wtzt14s80	37.5%	51%	76 bp	17%	0.3
H3W35AFXY_n02_adr3wtzt14s81	29.3%	50%	76 bp	17%	0.3
H3W35AFXY_n02_adr3wtzt14s82	35.5%	52%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s83	32.7%	51%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s84	40.8%	51%	76 bp	25%	0.3
H3W35AFXY_n02_adr3wtzt14s85	25.6%	56%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s86	26.6%	54%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s87	48.0%	49%	76 bp	25%	0.4
H3W35AFXY_n02_adr3wtzt14s88	28.5%	53%	76 bp	25%	0.1
H3W35AFXY_n02_adr3wtzt14s89	51.0%	46%	76 bp	33%	0.2
H3W35AFXY_n02_adr3wtzt14s9	26.2%	53%	76 bp	25%	0.4
H3W35AFXY_n02_adr3wtzt14s90	25.2%	55%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s91	19.5%	52%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s92	20.9%	55%	76 bp	25%	0.2
H3W35AFXY_n02_adr3wtzt14s93	36.7%	53%	76 bp	17%	0.3
H3W35AFXY_n02_adr3wtzt14s94	25.7%	53%	76 bp	17%	0.2
H3W35AFXY_n02_adr3wtzt14s95	26.6%	55%	76 bp	25%	0.3
H3W35AFXY_n02_adr3wtzt14s96	3.1%	49%	76 bp	50%	0.0

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	FastQC	% Dups	% Duplicate Reads	`percent_duplicates`	None
\|\|	FastQC	% GC	Average % GC Content	`percent_gc`	None
\|\|	FastQC	Length	Average Sequence Length (bp)	`avg_sequence_length`	None
\|\|	FastQC	% Failed	Percentage of modules failed in FastQC report (includes those not plotted here)	`percent_fails`	None
\|\|	FastQC	M Seqs	Total Sequences (millions)	`total_sequences`	read_count

Run Statistics

Showing ¹/₁ rows and ⁴/₄ columns.

Number of Lanes	Total # of Single-End Reads	Total # PF Reads	Undetermined	% PhiX Aligned
4.0	29719246	28218409	25.2	15.2

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	Undetermined	Undetermined	`Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

Demultiplexing Report

Demultiplexing Report
Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.
Perfect: The percentage of reads in this library which have a barcode perfectly matching the barcode specified in TuboWeb. The remainder of reads have mismatches upto the max number of mismatches specified in TuboWeb (Allowed barcode mismatch option in your Library Pool).

Showing ⁹⁶/₉₆ rows and ³/₃ columns.

Library	Total Read Count	Portion (%)	Perfect (%)
adr3wtzt14s84	320618	1.5	98.0
adr3wtzt14s48	215637	1.0	97.8
adr3wtzt14s47	98842	0.5	98.2
adr3wtzt14s31	107662	0.5	97.7
adr3wtzt14s75	225432	1.1	97.9
adr3wtzt14s50	99665	0.5	97.7
adr3wtzt14s39	67966	0.3	97.7
adr3wtzt14s13	491546	2.3	98.1
adr3wtzt14s21	335990	1.6	98.0
adr3wtzt14s71	172700	0.8	97.3
adr3wtzt14s42	143483	0.7	98.0
adr3wtzt14s96	97.0	0.0	80.6
adr3wtzt14s46	152878	0.7	98.3
adr3wtzt14s16	53696	0.3	95.2
adr3wtzt14s32	323353	1.5	97.8
adr3wtzt14s26	249831	1.2	97.9
adr3wtzt14s54	94178	0.4	97.7
adr3wtzt14s88	125896	0.6	97.7
adr3wtzt14s6	226985	1.1	98.3
adr3wtzt14s5	674320	3.2	98.1
adr3wtzt14s70	158691	0.8	98.0
adr3wtzt14s35	163858	0.8	97.9
adr3wtzt14s44	154788	0.7	98.0
adr3wtzt14s67	234777	1.1	97.6
adr3wtzt14s76	205181	1.0	98.1
adr3wtzt14s80	315303	1.5	97.9
adr3wtzt14s22	224499	1.1	98.3
adr3wtzt14s51	227078	1.1	97.9
adr3wtzt14s79	147924	0.7	97.9
adr3wtzt14s10	294054	1.4	98.1
adr3wtzt14s38	251217	1.2	98.2
adr3wtzt14s82	207992	1.0	98.1
adr3wtzt14s77	121013	0.6	97.9
adr3wtzt14s64	337217	1.6	97.5
adr3wtzt14s19	361913	1.7	97.9
adr3wtzt14s14	423984	2.0	98.4
adr3wtzt14s11	410456	1.9	97.9
adr3wtzt14s95	293707	1.4	97.9
adr3wtzt14s56	279861	1.3	97.6
adr3wtzt14s25	1745	0.0	92.0
adr3wtzt14s9	411972	2.0	98.2
adr3wtzt14s15	308742	1.5	97.8
adr3wtzt14s94	245585	1.2	98.2
adr3wtzt14s60	273704	1.3	97.7
adr3wtzt14s3	604605	2.9	98.0
adr3wtzt14s12	422824	2.0	98.1
adr3wtzt14s24	290671	1.4	97.9
adr3wtzt14s23	93734	0.4	97.8
adr3wtzt14s72	354754	1.7	97.7
adr3wtzt14s74	114837	0.5	98.0
adr3wtzt14s81	266457	1.3	98.1
adr3wtzt14s90	239816	1.1	98.0
adr3wtzt14s63	163871	0.8	97.8
adr3wtzt14s55	172980	0.8	98.0
adr3wtzt14s62	104836	0.5	98.1
adr3wtzt14s85	224589	1.1	97.7
adr3wtzt14s53	191796	0.9	98.0
adr3wtzt14s68	289298	1.4	97.9
adr3wtzt14s20	239550	1.1	98.1
adr3wtzt14s37	198492	0.9	97.9
adr3wtzt14s61	190720	0.9	97.7
adr3wtzt14s52	150105	0.7	98.1
adr3wtzt14s1	96906	0.5	98.4
adr3wtzt14s87	394271	1.9	98.1
adr3wtzt14s45	144418	0.7	97.7
adr3wtzt14s41	193462	0.9	98.1
adr3wtzt14s65	91711	0.4	98.0
adr3wtzt14s73	157616	0.7	98.0
adr3wtzt14s36	203103	1.0	98.1
adr3wtzt14s29	242519	1.1	97.8
adr3wtzt14s34	225859	1.1	98.1
adr3wtzt14s78	216409	1.0	98.3
adr3wtzt14s66	94145	0.4	97.5
adr3wtzt14s2	108005	0.5	98.0
adr3wtzt14s93	343608	1.6	98.0
adr3wtzt14s86	245902	1.2	98.1
adr3wtzt14s83	187774	0.9	97.5
adr3wtzt14s92	218982	1.0	97.9
adr3wtzt14s49	193089	0.9	98.1
adr3wtzt14s4	517983	2.5	98.2
adr3wtzt14s40	258096	1.2	97.8
adr3wtzt14s27	176779	0.8	97.7
adr3wtzt14s30	195921	0.9	98.1
adr3wtzt14s59	172595	0.8	97.4
adr3wtzt14s33	248883	1.2	98.1
adr3wtzt14s57	99535	0.5	97.9
adr3wtzt14s18	330827	1.6	98.2
adr3wtzt14s8	3172	0.0	96.3
adr3wtzt14s7	74539	0.4	97.8
adr3wtzt14s58	93821	0.4	98.0
adr3wtzt14s43	184158	0.9	97.9
adr3wtzt14s17	25043	0.1	97.8
adr3wtzt14s89	243093	1.2	98.2
adr3wtzt14s28	199689	0.9	98.0
adr3wtzt14s91	227133	1.1	97.7
adr3wtzt14s69	146673	0.7	97.6

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total Read Count	Total Read Count	`Total Read Count`	None
\|\|	Portion (%)	Portion (%)	`Portion (%)`	None
\|\|	Perfect (%)	Perfect (%)	`Perfect (%)`	None

FastQC

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

Sequence Quality Histograms

The mean quality value across each base position in the read. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

Click a heatmap row to see a line plot for that dataset.

rollover for sample name

Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base N Content

The percentage of base calls at each position for which an N was called. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Length Distribution

All samples have sequences of a single length (76bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Overrepresented sequences

The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

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General Statistics

General Statistics: Columns

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Table Uctw: Columns

Demultiplexing Report

Table Mslb: Columns

FastQC

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

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Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

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