FastQCFastQC Report
Thu 26 Jul 2018
H3W35AFXY_n02_adr3wtzt14s8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3W35AFXY_n02_adr3wtzt14s8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3172
Sequences flagged as poor quality0
Sequence length76
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCATTGCCGATCGGAAGAGCACACGTCTCATTGCCGATCGGAAGAGCA521.639344262295082Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
GCAATGAGACGTGTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCG361.1349306431273645No Hit
GTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGCAATGAG331.0403530895334174TruSeq Adapter, Index 1 (95% over 22bp)
CTTCCGATCTAGGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACG331.0403530895334174Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
GAAGAGCACACGTCTCATTGCCGATCGGAAGAGCACACGTCTCATTGCCG300.9457755359394703Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
GATCGGAAGAGCACACGTCTCCCGCCTAGATCGGAAGAGCACACGTCTCC290.9142496847414879Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CTTCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGCAATGAGACGTG260.819672131147541TruSeq Adapter, Index 2 (95% over 22bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG220.6935687263556116No Hit
GACGTGTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGCA190.5989911727616646TruSeq Adapter, Index 2 (95% over 22bp)
TCTCCCCACAGATCGGAAGAGCACACGTCTCCCCACAGATCGGAAGAGCA180.5674653215636822Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GAGCACACGTCTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGA170.5359394703656999Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GATCGGAAGAGCACACGTCTCATTGCCGATCGGAAGAGCACACGTCTCAT170.5359394703656999Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
TCTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATCGGAAGAG160.5044136191677175Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GTGGGGAGACGTGTGCTCTTCCGATCTGTGGGGAGACGTGTGCTCTTCCG150.47288776796973514Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
GCACACGTCTCATTGCCGATCGGAAGAGCACACGTCTCATTGCCGATCGG150.47288776796973514Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
GATCGGAAGAGCACACGTCTCCCCACAGATCGGAAGAGCACACGTCTCCC130.4098360655737705Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CGTCTCATTGCCGATCGGAAGAGCACACGTCTCATTGCCGATCGGAAGAG120.37831021437578816Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
GTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGG120.37831021437578816Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
GCAATGAGACGTGTGCTCTTCCGATCGGAAGAGCACACGTCTCATTGCCG120.37831021437578816Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
TGAGACGTGTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCGATCG100.31525851197982346Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
AGGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTC100.31525851197982346Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
GACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTCCGATCTAG90.2837326607818411Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
AATGAGACGTGTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCGAT90.2837326607818411Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
CTTCCGATCTGTGGGGAGACGTGTGCTCTTCCGATCTGTGGGGAGACGTG90.2837326607818411Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
TCTCATTGCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGCAATGAG80.25220680958385877TruSeq Adapter, Index 5 (95% over 22bp)
GATCTAGGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGC80.25220680958385877Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
CGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTCCGATCTAGGC80.25220680958385877Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
ATCTAGGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCT80.25220680958385877Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
GAAGAGCACACGTCTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCT80.25220680958385877Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTCC80.25220680958385877Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
GCACACGTCTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATC70.22068095838587645Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CTTCCGATCTCGGAGCCTGAGACCCTGAGAGCCCGTGACCTGAGTCAGCT70.22068095838587645No Hit
GCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATCGGAAGAGCACACG60.18915510718789408Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
TCCGATCTGTGGGGAGACGTGTGCTCTTCCGATCTGTGGGGAGACGTGTG60.18915510718789408Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
CGTCTCCCCACAGATCGGAAGAGCACACGTCTCCCCACAGATCGGAAGAG60.18915510718789408Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CACGTCTCATTGCCGATCGGAAGAGCACACGTCTCATTGCCGATCGGAAG50.15762925598991173Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
GAGCACACGTCTCATTGCCGATCGGAAGAGCACACGTCTCATTGCCGATC50.15762925598991173Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
CGTGTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGCAAT50.15762925598991173TruSeq Adapter, Index 2 (95% over 22bp)
CACGTCTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATCGGA50.15762925598991173Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CTTCCGATCTCGGAGCCTGAGACCCTGAGAGCCCGTGACCCTGTCTCTTA40.12610340479192939No Hit
CTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATCGGAAGAGC40.12610340479192939Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTCCGATC40.12610340479192939Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
GACGTGTGCTCTTCCGATCGGAAGAGCACACGTCTCATTGCCGATCGGAA40.12610340479192939Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
GTGCTCTTCCGATCGGAAGAGCACACGTCTCATTGCCGATCGGAAGAGCA40.12610340479192939Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
CGTCTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATCGGAAG40.12610340479192939Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers