FastQCFastQC Report
Thu 26 Jul 2018
H3W35AFXY_n01_adr3wtzt14s8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3W35AFXY_n01_adr3wtzt14s8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3172
Sequences flagged as poor quality0
Sequence length76
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCATTGCCGATCGGAAGAGCACACGTCTCATTGCCGATCGGAAGAGCA541.7023959646910467Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
GCAATGAGACGTGTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCG431.355611601513241No Hit
CTTCCGATCTAGGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACG391.2295081967213115Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
GTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGCAATGAG351.1034047919293821TruSeq Adapter, Index 1 (95% over 22bp)
GAAGAGCACACGTCTCATTGCCGATCGGAAGAGCACACGTCTCATTGCCG351.1034047919293821Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
GTGGGGAGACGTGTGCTCTTCCGATCTGTGGGGAGACGTGTGCTCTTCCG220.6935687263556116Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
TCTCCCCACAGATCGGAAGAGCACACGTCTCCCCACAGATCGGAAGAGCA220.6935687263556116Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GATCGGAAGAGCACACGTCTCCCGCCTAGATCGGAAGAGCACACGTCTCC210.6620428751576293Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CTTCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGCAATGAGACGTG200.6305170239596469TruSeq Adapter, Index 2 (95% over 22bp)
GACGTGTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGCA160.5044136191677175TruSeq Adapter, Index 2 (95% over 22bp)
GAAGAGCACACGTCTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCT160.5044136191677175Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GATCGGAAGAGCACACGTCTCATTGCCGATCGGAAGAGCACACGTCTCAT150.47288776796973514Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
GTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGG140.4413619167717529Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
TGAGACGTGTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCGATCG130.4098360655737705Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
GACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTCCGATCTAG130.4098360655737705Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACACTCGCTAATCTCGTATGCCGT130.4098360655737705No Hit
TCTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATCGGAAGAG130.4098360655737705Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GATCTAGGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGC120.37831021437578816Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
AATGAGACGTGTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCGAT120.37831021437578816Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
GAGCACACGTCTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGA110.3467843631778058Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CGTCTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATCGGAAG110.3467843631778058Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTCCGATCTAGGC100.31525851197982346Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
CTTCCGATCTGTGGGGAGACGTGTGCTCTTCCGATCTGTGGGGAGACGTG100.31525851197982346Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
CTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATCGGAAGAGC90.2837326607818411Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CGTCTCATTGCCGATCGGAAGAGCACACGTCTCATTGCCGATCGGAAGAG90.2837326607818411Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
GCACACGTCTCATTGCCGATCGGAAGAGCACACGTCTCATTGCCGATCGG90.2837326607818411Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
CGGGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTCCGA90.2837326607818411Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
GATCGGAAGAGCACACGTCTCCCCACAGATCGGAAGAGCACACGTCTCCC90.2837326607818411Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
AGGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTC90.2837326607818411Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
CTTCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGAAGAGCACACGT80.25220680958385877TruSeq Adapter, Index 2 (95% over 22bp)
TCTCATTGCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGCAATGAG80.25220680958385877TruSeq Adapter, Index 5 (95% over 22bp)
GCACACGTCTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATC80.25220680958385877Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GAGCACACGTCTCATTGCCGATCGGAAGAGCACACGTCTCATTGCCGATC80.25220680958385877Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
CACGTCTCCCGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATCGGA80.25220680958385877Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
GGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTCCGATC70.22068095838587645Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
TCCGATCTGTGGGGAGACGTGTGCTCTTCCGATCTGTGGGGAGACGTGTG70.22068095838587645Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
CACGTCTCATTGCCGATCGGAAGAGCACACGTCTCATTGCCGATCGGAAG70.22068095838587645Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
CGCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATCGGAAGAGCACAC70.22068095838587645Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CGTGTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGCAAT70.22068095838587645TruSeq Adapter, Index 2 (95% over 22bp)
GGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCTCTTCC70.22068095838587645Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
GCAATGAGACGTGTGCTCTTCCGATCGGAAGAGCACACGTCTCATTGCCG60.18915510718789408Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
ATCTAGGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGGAGACGTGTGCT60.18915510718789408Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)
GAAGAGCACACGTCTCCCCACAGATCGGAAGAGCACACGTCTCCCCACAG60.18915510718789408Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CTCTTCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGCAATGAGACG40.12610340479192939TruSeq Adapter, Index 1 (95% over 22bp)
AGCTGACTCAGGTCACGGGCTCTCAGGGTCTCAGGCTCCGAGATCGGAAG40.12610340479192939No Hit
GCCTAGATCGGAAGAGCACACGTCTCCCGCCTAGATCGGAAGAGCACACG40.12610340479192939Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
TCCGATCGGCAATGAGACGTGTGCTCTTCCGATCGGCAATGAGACGTGTG40.12610340479192939TruSeq Adapter, Index 2 (95% over 22bp)
GGTCACGGGCTCTCAGGGTCTCAGGCTCCGAGATCGGAAGCTGTCTCTTA40.12610340479192939No Hit
TTGCCGATCGGAAGAGCACACGTCTCATTGCCGATCGGAAGAGCACACGT40.12610340479192939Illumina Multiplexing Index Sequencing Primer (95% over 22bp)
CTTCCGATCTAAGGCGGGAGACGTGTGCTCTTCCGATCTAGGCGGGAGAC40.12610340479192939Illumina Multiplexing PCR Primer 2.01 (95% over 22bp)
GGCAATGAGACGTGTGCTCTTCCGATCGGCAATGAGACGTGTGCTCTTCC40.12610340479192939No Hit
GAGCACACGTCTCCCCACAGATCGGAAGAGCACACGTCTCCCCACAGATC40.12610340479192939Illumina Multiplexing PCR Primer 2.01 (95% over 21bp)
CTGTGGGGAGACGTGTGCTCTTCCGATCTGTGGGGAGACGTGTGCTCTTC40.12610340479192939Illumina Multiplexing PCR Primer 2.01 (100% over 21bp)

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers