MultiQC Report

Toolbox

MultiQC Toolbox

Highlight Samples

This report has flat image plots that won't be highlighted.
See the documentation for help.

Regex mode off

Rename Samples

This report has flat image plots that won't be renamed.
See the documentation for help.

Click here for bulk input.

Paste two columns of a tab-delimited table here (eg. from Excel).

First column should be the old name, second column the new name.

Regex mode off

Show / Hide Samples

This report has flat image plots that won't be hidden.
See the documentation for help.

Regex mode off

Aspect ratio

Plot scaling

Download the raw data used to create the plots in this report below:

Format:

Note that additional data was saved in multiqc_data when this report was generated.

Choose Plots

If you use plots from MultiQC in a publication or presentation, please cite:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

Save Settings

You can save the toolbox settings for this report to the browser.

Load Settings

Choose a saved report profile from the dropdown box below:

About MultiQC

This report was generated using MultiQC, version 1.0.dev0

You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

Loading report..

Report generated on 2018-08-03, 10:08 based on data in: /mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/H3VNWAFXY/merged

General Statistics

Showing ¹⁹²/₁₉₂ rows and ³/₅ columns.

Sample Name	% Dups	% GC	Length	% Failed	M Seqs
H3VNWAFXY_n01_adr3wtzt14s1	19.1%	52%	76 bp	17%	0.2
H3VNWAFXY_n01_adr3wtzt14s10	37.9%	51%	76 bp	25%	0.7
H3VNWAFXY_n01_adr3wtzt14s11	51.0%	53%	76 bp	42%	0.9
H3VNWAFXY_n01_adr3wtzt14s12	49.9%	55%	76 bp	25%	1.0
H3VNWAFXY_n01_adr3wtzt14s13	57.0%	52%	76 bp	25%	1.1
H3VNWAFXY_n01_adr3wtzt14s14	45.3%	53%	76 bp	17%	1.0
H3VNWAFXY_n01_adr3wtzt14s15	45.7%	55%	76 bp	25%	0.7
H3VNWAFXY_n01_adr3wtzt14s16	26.5%	46%	76 bp	25%	0.1
H3VNWAFXY_n01_adr3wtzt14s17	51.9%	46%	76 bp	33%	0.1
H3VNWAFXY_n01_adr3wtzt14s18	48.5%	54%	76 bp	33%	0.7
H3VNWAFXY_n01_adr3wtzt14s19	45.8%	55%	76 bp	33%	0.8
H3VNWAFXY_n01_adr3wtzt14s2	38.6%	52%	76 bp	25%	0.3
H3VNWAFXY_n01_adr3wtzt14s20	36.2%	55%	76 bp	17%	0.5
H3VNWAFXY_n01_adr3wtzt14s21	53.0%	52%	76 bp	33%	0.8
H3VNWAFXY_n01_adr3wtzt14s22	35.8%	51%	76 bp	33%	0.5
H3VNWAFXY_n01_adr3wtzt14s23	29.6%	53%	76 bp	25%	0.2
H3VNWAFXY_n01_adr3wtzt14s24	64.1%	48%	76 bp	25%	0.7
H3VNWAFXY_n01_adr3wtzt14s25	70.1%	55%	76 bp	50%	0.0
H3VNWAFXY_n01_adr3wtzt14s26	40.6%	51%	76 bp	25%	0.6
H3VNWAFXY_n01_adr3wtzt14s27	35.5%	51%	76 bp	25%	0.4
H3VNWAFXY_n01_adr3wtzt14s28	39.5%	53%	76 bp	33%	0.5
H3VNWAFXY_n01_adr3wtzt14s29	47.3%	49%	76 bp	17%	0.5
H3VNWAFXY_n01_adr3wtzt14s3	54.3%	53%	76 bp	42%	1.4
H3VNWAFXY_n01_adr3wtzt14s30	42.7%	50%	76 bp	17%	0.4
H3VNWAFXY_n01_adr3wtzt14s31	29.3%	54%	76 bp	25%	0.2
H3VNWAFXY_n01_adr3wtzt14s32	51.0%	46%	76 bp	42%	0.7
H3VNWAFXY_n01_adr3wtzt14s33	32.1%	51%	76 bp	25%	0.6
H3VNWAFXY_n01_adr3wtzt14s34	44.7%	50%	76 bp	25%	0.5
H3VNWAFXY_n01_adr3wtzt14s35	33.4%	52%	76 bp	25%	0.4
H3VNWAFXY_n01_adr3wtzt14s36	35.0%	52%	76 bp	25%	0.5
H3VNWAFXY_n01_adr3wtzt14s37	33.1%	52%	76 bp	25%	0.5
H3VNWAFXY_n01_adr3wtzt14s38	48.0%	51%	76 bp	25%	0.6
H3VNWAFXY_n01_adr3wtzt14s39	22.7%	53%	76 bp	17%	0.2
H3VNWAFXY_n01_adr3wtzt14s4	56.2%	56%	76 bp	33%	1.2
H3VNWAFXY_n01_adr3wtzt14s40	44.5%	52%	76 bp	25%	0.6
H3VNWAFXY_n01_adr3wtzt14s41	31.2%	54%	76 bp	17%	0.4
H3VNWAFXY_n01_adr3wtzt14s42	27.4%	54%	76 bp	17%	0.3
H3VNWAFXY_n01_adr3wtzt14s43	39.0%	50%	76 bp	25%	0.4
H3VNWAFXY_n01_adr3wtzt14s44	25.6%	54%	76 bp	17%	0.3
H3VNWAFXY_n01_adr3wtzt14s45	32.9%	55%	76 bp	17%	0.3
H3VNWAFXY_n01_adr3wtzt14s46	27.3%	54%	76 bp	17%	0.3
H3VNWAFXY_n01_adr3wtzt14s47	47.0%	48%	76 bp	25%	0.2
H3VNWAFXY_n01_adr3wtzt14s48	40.6%	50%	76 bp	25%	0.5
H3VNWAFXY_n01_adr3wtzt14s49	38.0%	53%	76 bp	17%	0.5
H3VNWAFXY_n01_adr3wtzt14s5	59.5%	54%	76 bp	33%	1.5
H3VNWAFXY_n01_adr3wtzt14s50	24.6%	55%	76 bp	17%	0.2
H3VNWAFXY_n01_adr3wtzt14s51	53.1%	49%	76 bp	33%	0.5
H3VNWAFXY_n01_adr3wtzt14s52	33.6%	53%	76 bp	17%	0.3
H3VNWAFXY_n01_adr3wtzt14s53	53.3%	47%	76 bp	33%	0.4
H3VNWAFXY_n01_adr3wtzt14s54	27.1%	53%	76 bp	17%	0.2
H3VNWAFXY_n01_adr3wtzt14s55	41.1%	49%	76 bp	25%	0.4
H3VNWAFXY_n01_adr3wtzt14s56	38.6%	54%	76 bp	17%	0.7
H3VNWAFXY_n01_adr3wtzt14s57	34.3%	51%	76 bp	25%	0.2
H3VNWAFXY_n01_adr3wtzt14s58	26.5%	52%	76 bp	17%	0.2
H3VNWAFXY_n01_adr3wtzt14s59	34.4%	54%	76 bp	25%	0.4
H3VNWAFXY_n01_adr3wtzt14s6	44.4%	54%	76 bp	25%	0.5
H3VNWAFXY_n01_adr3wtzt14s60	36.6%	56%	76 bp	25%	0.6
H3VNWAFXY_n01_adr3wtzt14s61	37.0%	52%	76 bp	17%	0.4
H3VNWAFXY_n01_adr3wtzt14s62	34.3%	53%	76 bp	17%	0.2
H3VNWAFXY_n01_adr3wtzt14s63	28.2%	53%	76 bp	17%	0.4
H3VNWAFXY_n01_adr3wtzt14s64	43.7%	51%	76 bp	25%	0.8
H3VNWAFXY_n01_adr3wtzt14s65	32.8%	51%	76 bp	17%	0.2
H3VNWAFXY_n01_adr3wtzt14s66	24.9%	52%	76 bp	25%	0.2
H3VNWAFXY_n01_adr3wtzt14s67	34.3%	52%	76 bp	25%	0.5
H3VNWAFXY_n01_adr3wtzt14s68	38.7%	54%	76 bp	17%	0.7
H3VNWAFXY_n01_adr3wtzt14s69	36.7%	54%	76 bp	25%	0.3
H3VNWAFXY_n01_adr3wtzt14s7	27.1%	55%	76 bp	25%	0.2
H3VNWAFXY_n01_adr3wtzt14s70	34.0%	54%	76 bp	17%	0.4
H3VNWAFXY_n01_adr3wtzt14s71	36.9%	50%	76 bp	25%	0.4
H3VNWAFXY_n01_adr3wtzt14s72	42.5%	51%	76 bp	25%	0.8
H3VNWAFXY_n01_adr3wtzt14s73	38.4%	52%	76 bp	25%	0.4
H3VNWAFXY_n01_adr3wtzt14s74	30.9%	52%	76 bp	25%	0.3
H3VNWAFXY_n01_adr3wtzt14s75	40.0%	52%	76 bp	17%	0.5
H3VNWAFXY_n01_adr3wtzt14s76	37.7%	50%	76 bp	17%	0.5
H3VNWAFXY_n01_adr3wtzt14s77	38.1%	51%	76 bp	25%	0.3
H3VNWAFXY_n01_adr3wtzt14s78	32.9%	52%	76 bp	25%	0.5
H3VNWAFXY_n01_adr3wtzt14s79	25.7%	54%	76 bp	25%	0.3
H3VNWAFXY_n01_adr3wtzt14s8	32.0%	56%	76 bp	42%	0.0
H3VNWAFXY_n01_adr3wtzt14s80	48.2%	51%	76 bp	17%	0.7
H3VNWAFXY_n01_adr3wtzt14s81	37.4%	50%	76 bp	33%	0.6
H3VNWAFXY_n01_adr3wtzt14s82	44.1%	51%	76 bp	25%	0.5
H3VNWAFXY_n01_adr3wtzt14s83	41.6%	51%	76 bp	17%	0.4
H3VNWAFXY_n01_adr3wtzt14s84	50.7%	51%	76 bp	33%	0.7
H3VNWAFXY_n01_adr3wtzt14s85	36.5%	55%	76 bp	17%	0.5
H3VNWAFXY_n01_adr3wtzt14s86	37.5%	54%	76 bp	25%	0.6
H3VNWAFXY_n01_adr3wtzt14s87	55.5%	49%	76 bp	42%	0.9
H3VNWAFXY_n01_adr3wtzt14s88	44.2%	53%	76 bp	25%	0.3
H3VNWAFXY_n01_adr3wtzt14s89	55.9%	46%	76 bp	42%	0.6
H3VNWAFXY_n01_adr3wtzt14s9	36.1%	53%	76 bp	25%	1.0
H3VNWAFXY_n01_adr3wtzt14s90	34.6%	54%	76 bp	17%	0.6
H3VNWAFXY_n01_adr3wtzt14s91	29.0%	51%	76 bp	25%	0.5
H3VNWAFXY_n01_adr3wtzt14s92	30.3%	55%	76 bp	17%	0.5
H3VNWAFXY_n01_adr3wtzt14s93	46.9%	52%	76 bp	25%	0.8
H3VNWAFXY_n01_adr3wtzt14s94	34.9%	53%	76 bp	25%	0.6
H3VNWAFXY_n01_adr3wtzt14s95	38.3%	55%	76 bp	17%	0.7
H3VNWAFXY_n01_adr3wtzt14s96	1.7%	50%	76 bp	42%	0.0
H3VNWAFXY_n02_adr3wtzt14s1	17.3%	52%	76 bp	33%	0.2
H3VNWAFXY_n02_adr3wtzt14s10	30.8%	51%	76 bp	33%	0.7
H3VNWAFXY_n02_adr3wtzt14s11	40.1%	52%	76 bp	33%	0.9
H3VNWAFXY_n02_adr3wtzt14s12	34.8%	54%	76 bp	33%	1.0
H3VNWAFXY_n02_adr3wtzt14s13	50.4%	52%	76 bp	33%	1.1
H3VNWAFXY_n02_adr3wtzt14s14	38.0%	53%	76 bp	42%	1.0
H3VNWAFXY_n02_adr3wtzt14s15	33.7%	54%	76 bp	33%	0.7
H3VNWAFXY_n02_adr3wtzt14s16	41.7%	45%	76 bp	42%	0.1
H3VNWAFXY_n02_adr3wtzt14s17	54.5%	49%	76 bp	42%	0.1
H3VNWAFXY_n02_adr3wtzt14s18	39.5%	53%	76 bp	33%	0.7
H3VNWAFXY_n02_adr3wtzt14s19	31.8%	54%	76 bp	33%	0.8
H3VNWAFXY_n02_adr3wtzt14s2	32.9%	52%	76 bp	33%	0.3
H3VNWAFXY_n02_adr3wtzt14s20	33.0%	55%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s21	40.8%	52%	76 bp	33%	0.8
H3VNWAFXY_n02_adr3wtzt14s22	30.4%	51%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s23	32.6%	52%	76 bp	33%	0.2
H3VNWAFXY_n02_adr3wtzt14s24	59.4%	48%	76 bp	50%	0.7
H3VNWAFXY_n02_adr3wtzt14s25	71.6%	86%	76 bp	42%	0.0
H3VNWAFXY_n02_adr3wtzt14s26	34.1%	50%	76 bp	33%	0.6
H3VNWAFXY_n02_adr3wtzt14s27	30.5%	50%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s28	33.8%	52%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s29	42.9%	49%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s3	41.2%	53%	76 bp	33%	1.4
H3VNWAFXY_n02_adr3wtzt14s30	38.4%	50%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s31	24.1%	53%	76 bp	33%	0.2
H3VNWAFXY_n02_adr3wtzt14s32	46.8%	46%	76 bp	42%	0.7
H3VNWAFXY_n02_adr3wtzt14s33	29.6%	51%	76 bp	50%	0.6
H3VNWAFXY_n02_adr3wtzt14s34	38.6%	49%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s35	28.1%	52%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s36	28.9%	51%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s37	27.2%	52%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s38	41.8%	51%	76 bp	33%	0.6
H3VNWAFXY_n02_adr3wtzt14s39	41.1%	53%	76 bp	42%	0.2
H3VNWAFXY_n02_adr3wtzt14s4	36.1%	55%	76 bp	33%	1.2
H3VNWAFXY_n02_adr3wtzt14s40	41.1%	52%	76 bp	33%	0.6
H3VNWAFXY_n02_adr3wtzt14s41	27.0%	54%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s42	24.4%	54%	76 bp	33%	0.3
H3VNWAFXY_n02_adr3wtzt14s43	33.5%	50%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s44	21.5%	53%	76 bp	33%	0.3
H3VNWAFXY_n02_adr3wtzt14s45	26.1%	55%	76 bp	33%	0.3
H3VNWAFXY_n02_adr3wtzt14s46	23.1%	54%	76 bp	33%	0.3
H3VNWAFXY_n02_adr3wtzt14s47	58.9%	48%	76 bp	42%	0.2
H3VNWAFXY_n02_adr3wtzt14s48	36.9%	50%	76 bp	42%	0.5
H3VNWAFXY_n02_adr3wtzt14s49	35.0%	53%	76 bp	42%	0.5
H3VNWAFXY_n02_adr3wtzt14s5	40.6%	53%	76 bp	42%	1.5
H3VNWAFXY_n02_adr3wtzt14s50	21.9%	55%	76 bp	42%	0.2
H3VNWAFXY_n02_adr3wtzt14s51	46.6%	49%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s52	28.6%	52%	76 bp	33%	0.3
H3VNWAFXY_n02_adr3wtzt14s53	48.2%	47%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s54	22.7%	53%	76 bp	33%	0.2
H3VNWAFXY_n02_adr3wtzt14s55	36.1%	49%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s56	35.2%	54%	76 bp	42%	0.7
H3VNWAFXY_n02_adr3wtzt14s57	34.2%	50%	76 bp	33%	0.2
H3VNWAFXY_n02_adr3wtzt14s58	24.1%	52%	76 bp	33%	0.2
H3VNWAFXY_n02_adr3wtzt14s59	27.0%	54%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s6	33.1%	53%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s60	28.3%	56%	76 bp	42%	0.6
H3VNWAFXY_n02_adr3wtzt14s61	31.8%	52%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s62	29.3%	53%	76 bp	33%	0.2
H3VNWAFXY_n02_adr3wtzt14s63	24.8%	52%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s64	38.2%	51%	76 bp	33%	0.8
H3VNWAFXY_n02_adr3wtzt14s65	35.0%	51%	76 bp	33%	0.2
H3VNWAFXY_n02_adr3wtzt14s66	20.6%	52%	76 bp	33%	0.2
H3VNWAFXY_n02_adr3wtzt14s67	28.2%	52%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s68	31.8%	54%	76 bp	33%	0.7
H3VNWAFXY_n02_adr3wtzt14s69	30.6%	53%	76 bp	33%	0.3
H3VNWAFXY_n02_adr3wtzt14s7	39.4%	54%	76 bp	42%	0.2
H3VNWAFXY_n02_adr3wtzt14s70	28.1%	54%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s71	33.1%	50%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s72	38.4%	51%	76 bp	42%	0.8
H3VNWAFXY_n02_adr3wtzt14s73	32.0%	51%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s74	25.9%	52%	76 bp	42%	0.3
H3VNWAFXY_n02_adr3wtzt14s75	34.2%	52%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s76	34.4%	50%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s77	32.9%	51%	76 bp	33%	0.3
H3VNWAFXY_n02_adr3wtzt14s78	27.8%	52%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s79	20.9%	54%	76 bp	33%	0.3
H3VNWAFXY_n02_adr3wtzt14s8	29.8%	57%	76 bp	42%	0.0
H3VNWAFXY_n02_adr3wtzt14s80	41.3%	51%	76 bp	33%	0.7
H3VNWAFXY_n02_adr3wtzt14s81	33.9%	50%	76 bp	42%	0.6
H3VNWAFXY_n02_adr3wtzt14s82	40.2%	51%	76 bp	25%	0.5
H3VNWAFXY_n02_adr3wtzt14s83	35.2%	50%	76 bp	33%	0.4
H3VNWAFXY_n02_adr3wtzt14s84	42.6%	51%	76 bp	33%	0.7
H3VNWAFXY_n02_adr3wtzt14s85	28.4%	55%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s86	30.0%	54%	76 bp	33%	0.6
H3VNWAFXY_n02_adr3wtzt14s87	50.2%	49%	76 bp	42%	0.9
H3VNWAFXY_n02_adr3wtzt14s88	33.5%	52%	76 bp	33%	0.3
H3VNWAFXY_n02_adr3wtzt14s89	51.6%	46%	76 bp	50%	0.6
H3VNWAFXY_n02_adr3wtzt14s9	30.0%	52%	76 bp	42%	1.0
H3VNWAFXY_n02_adr3wtzt14s90	31.6%	54%	76 bp	33%	0.6
H3VNWAFXY_n02_adr3wtzt14s91	26.2%	51%	76 bp	33%	0.5
H3VNWAFXY_n02_adr3wtzt14s92	27.6%	55%	76 bp	42%	0.5
H3VNWAFXY_n02_adr3wtzt14s93	39.6%	52%	76 bp	33%	0.8
H3VNWAFXY_n02_adr3wtzt14s94	28.0%	53%	76 bp	42%	0.6
H3VNWAFXY_n02_adr3wtzt14s95	29.7%	54%	76 bp	33%	0.7
H3VNWAFXY_n02_adr3wtzt14s96	1.7%	46%	76 bp	42%	0.0

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	FastQC	% Dups	% Duplicate Reads	`percent_duplicates`	None
\|\|	FastQC	% GC	Average % GC Content	`percent_gc`	None
\|\|	FastQC	Length	Average Sequence Length (bp)	`avg_sequence_length`	None
\|\|	FastQC	% Failed	Percentage of modules failed in FastQC report (includes those not plotted here)	`percent_fails`	None
\|\|	FastQC	M Seqs	Total Sequences (millions)	`total_sequences`	read_count

Run Statistics

Showing ¹/₁ rows and ⁴/₄ columns.

Number of Lanes	Total # of Single-End Reads	Total # PF Reads	Undetermined	% PhiX Aligned
4.0	60134877	56975406	15.1	9.2

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	Undetermined	Undetermined	`Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

Demultiplexing Report

Demultiplexing Report
Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.
Perfect: The percentage of reads in this library which have a barcode perfectly matching the barcode specified in TuboWeb. The remainder of reads have mismatches upto the max number of mismatches specified in TuboWeb (Allowed barcode mismatch option in your Library Pool).

Showing ⁹⁶/₉₆ rows and ³/₃ columns.

Library	Total Read Count	Portion (%)	Perfect (%)
adr3wtzt14s46	345182	0.7	98.7
adr3wtzt14s55	393095	0.8	98.3
adr3wtzt14s41	442991	0.9	98.5
adr3wtzt14s9	969400	2.0	98.5
adr3wtzt14s68	662058	1.4	98.4
adr3wtzt14s81	635479	1.3	98.5
adr3wtzt14s23	211164	0.4	98.3
adr3wtzt14s36	471451	1.0	98.5
adr3wtzt14s43	413764	0.9	98.4
adr3wtzt14s92	531411	1.1	98.5
adr3wtzt14s7	173191	0.4	98.3
adr3wtzt14s14	958633	2.0	98.7
adr3wtzt14s89	567849	1.2	98.6
adr3wtzt14s3	1375826	2.8	98.5
adr3wtzt14s85	520653	1.1	98.2
adr3wtzt14s70	356691	0.7	98.5
adr3wtzt14s5	1542775	3.2	98.5
adr3wtzt14s86	575690	1.2	98.6
adr3wtzt14s59	396164	0.8	98.1
adr3wtzt14s71	396289	0.8	97.9
adr3wtzt14s12	980930	2.0	98.6
adr3wtzt14s31	246698	0.5	98.3
adr3wtzt14s93	823126	1.7	98.4
adr3wtzt14s33	605903	1.3	98.5
adr3wtzt14s47	219000	0.5	98.5
adr3wtzt14s35	377547	0.8	98.3
adr3wtzt14s87	897255	1.9	98.4
adr3wtzt14s19	818627	1.7	98.4
adr3wtzt14s4	1200919	2.5	98.7
adr3wtzt14s29	541440	1.1	98.3
adr3wtzt14s61	426794	0.9	98.2
adr3wtzt14s83	443253	0.9	98.1
adr3wtzt14s53	437001	0.9	98.4
adr3wtzt14s67	524176	1.1	98.0
adr3wtzt14s82	479326	1.0	98.4
adr3wtzt14s22	501031	1.0	98.7
adr3wtzt14s40	605993	1.3	98.1
adr3wtzt14s37	456334	0.9	98.3
adr3wtzt14s10	674187	1.4	98.5
adr3wtzt14s51	519948	1.1	98.3
adr3wtzt14s49	452734	0.9	98.4
adr3wtzt14s44	347010	0.7	98.5
adr3wtzt14s79	335748	0.7	98.3
adr3wtzt14s32	712774	1.5	98.2
adr3wtzt14s45	328688	0.7	98.2
adr3wtzt14s18	735673	1.5	98.6
adr3wtzt14s95	699888	1.4	98.5
adr3wtzt14s28	453026	0.9	98.4
adr3wtzt14s80	719193	1.5	98.3
adr3wtzt14s96	175.0	0.0	89.2
adr3wtzt14s21	757190	1.6	98.5
adr3wtzt14s1	214359	0.4	98.7
adr3wtzt14s39	158714	0.3	98.2
adr3wtzt14s8	7339	0.0	97.5
adr3wtzt14s65	199100	0.4	98.4
adr3wtzt14s77	269626	0.6	98.3
adr3wtzt14s15	692991	1.4	98.3
adr3wtzt14s69	327162	0.7	98.1
adr3wtzt14s76	454853	0.9	98.5
adr3wtzt14s50	230312	0.5	98.2
adr3wtzt14s58	210194	0.4	98.3
adr3wtzt14s75	497759	1.0	98.2
adr3wtzt14s16	126661	0.3	96.6
adr3wtzt14s11	944270	2.0	98.3
adr3wtzt14s73	358157	0.7	98.4
adr3wtzt14s24	658389	1.4	98.3
adr3wtzt14s63	375356	0.8	98.2
adr3wtzt14s20	533729	1.1	98.6
adr3wtzt14s94	581194	1.2	98.8
adr3wtzt14s26	559939	1.2	98.3
adr3wtzt14s27	402778	0.8	98.2
adr3wtzt14s84	688916	1.4	98.4
adr3wtzt14s54	221717	0.5	98.4
adr3wtzt14s13	1102360	2.3	98.5
adr3wtzt14s78	481927	1.0	98.7
adr3wtzt14s6	518614	1.1	98.8
adr3wtzt14s2	250976	0.5	98.4
adr3wtzt14s30	448452	0.9	98.6
adr3wtzt14s38	588781	1.2	98.7
adr3wtzt14s62	239670	0.5	98.5
adr3wtzt14s91	529460	1.1	98.3
adr3wtzt14s60	637470	1.3	98.2
adr3wtzt14s25	6659	0.0	96.6
adr3wtzt14s34	519456	1.1	98.4
adr3wtzt14s56	671505	1.4	98.0
adr3wtzt14s57	225667	0.5	98.3
adr3wtzt14s74	255566	0.5	98.4
adr3wtzt14s48	500729	1.0	98.2
adr3wtzt14s90	571872	1.2	98.5
adr3wtzt14s72	833514	1.7	98.1
adr3wtzt14s64	779275	1.6	98.0
adr3wtzt14s42	326560	0.7	98.4
adr3wtzt14s17	62174	0.1	98.5
adr3wtzt14s66	208392	0.4	97.9
adr3wtzt14s88	317955	0.7	98.1
adr3wtzt14s52	349294	0.7	98.4

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total Read Count	Total Read Count	`Total Read Count`	None
\|\|	Portion (%)	Portion (%)	`Portion (%)`	None
\|\|	Perfect (%)	Perfect (%)	`Perfect (%)`	None

FastQC

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

Sequence Quality Histograms

The mean quality value across each base position in the read. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

Click a heatmap row to see a line plot for that dataset.

rollover for sample name

Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base N Content

The percentage of base calls at each position for which an N was called. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Length Distribution

All samples have sequences of a single length (76bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Overrepresented sequences

The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Toggle navigation v1.0.dev0

MultiQC Toolbox

Apply Highlight Samples

Apply Rename Samples

Apply Show / Hide Samples

Export Plots

Choose Plots

Save Settings

Load Settings

About MultiQC

General Statistics

General Statistics: Columns

Run Statistics

Table Ucke: Columns

Demultiplexing Report

Table Lckq: Columns

FastQC

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

rollover for sample name

Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

v1.0.dev0

Highlight Samples

Rename Samples

Show / Hide Samples