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MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

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This report was generated using MultiQC, version 1.0.dev0

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MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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Report generated on 2018-08-10, 13:08 based on data in: /mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/H3VL5AFXY/merged

General Statistics

Showing ¹⁹²/₁₉₂ rows and ³/₅ columns.

Sample Name	% Dups	% GC	Length	% Failed	M Seqs
H3VL5AFXY_n01_p4a1	35.7%	46%	151 bp	25%	0.7
H3VL5AFXY_n01_p4a10	51.1%	52%	151 bp	33%	1.1
H3VL5AFXY_n01_p4a11	53.7%	54%	151 bp	25%	0.7
H3VL5AFXY_n01_p4a12	27.8%	48%	151 bp	17%	0.1
H3VL5AFXY_n01_p4a2	41.8%	47%	151 bp	17%	0.9
H3VL5AFXY_n01_p4a3	62.3%	50%	151 bp	25%	0.8
H3VL5AFXY_n01_p4a4	37.1%	53%	151 bp	25%	0.3
H3VL5AFXY_n01_p4a5	47.0%	47%	151 bp	17%	1.4
H3VL5AFXY_n01_p4a6	44.5%	47%	151 bp	17%	1.0
H3VL5AFXY_n01_p4a7	51.4%	54%	151 bp	42%	0.6
H3VL5AFXY_n01_p4a8	81.8%	55%	151 bp	33%	1.1
H3VL5AFXY_n01_p4a9	36.2%	57%	151 bp	8%	0.4
H3VL5AFXY_n01_p4b1	40.0%	47%	151 bp	17%	0.8
H3VL5AFXY_n01_p4b10	21.9%	58%	151 bp	25%	0.4
H3VL5AFXY_n01_p4b11	39.1%	53%	151 bp	25%	0.8
H3VL5AFXY_n01_p4b12	37.6%	47%	151 bp	25%	0.6
H3VL5AFXY_n01_p4b2	28.8%	55%	151 bp	33%	0.4
H3VL5AFXY_n01_p4b3	39.8%	51%	151 bp	25%	0.6
H3VL5AFXY_n01_p4b4	40.4%	46%	151 bp	17%	1.1
H3VL5AFXY_n01_p4b5	65.4%	50%	151 bp	25%	1.5
H3VL5AFXY_n01_p4b6	24.4%	52%	151 bp	25%	0.3
H3VL5AFXY_n01_p4b7	47.7%	47%	151 bp	17%	1.1
H3VL5AFXY_n01_p4b8	49.4%	48%	151 bp	17%	1.1
H3VL5AFXY_n01_p4b9	38.6%	55%	151 bp	33%	0.4
H3VL5AFXY_n01_p4c1	64.2%	50%	151 bp	33%	1.2
H3VL5AFXY_n01_p4c10	51.8%	49%	151 bp	25%	0.5
H3VL5AFXY_n01_p4c11	23.7%	56%	151 bp	33%	0.5
H3VL5AFXY_n01_p4c12	47.9%	48%	151 bp	25%	0.8
H3VL5AFXY_n01_p4c2	29.0%	54%	151 bp	25%	0.5
H3VL5AFXY_n01_p4c3	38.1%	47%	151 bp	17%	0.6
H3VL5AFXY_n01_p4c4	60.7%	49%	151 bp	25%	1.2
H3VL5AFXY_n01_p4c5	31.3%	53%	151 bp	25%	0.4
H3VL5AFXY_n01_p4c6	28.4%	56%	151 bp	25%	0.4
H3VL5AFXY_n01_p4c7	76.0%	54%	151 bp	33%	1.1
H3VL5AFXY_n01_p4c8	35.8%	57%	151 bp	25%	0.5
H3VL5AFXY_n01_p4c9	12.9%	60%	151 bp	25%	0.3
H3VL5AFXY_n01_p4d1	39.5%	47%	151 bp	17%	0.6
H3VL5AFXY_n01_p4d10	48.4%	47%	151 bp	25%	1.2
H3VL5AFXY_n01_p4d11	41.2%	54%	151 bp	25%	0.7
H3VL5AFXY_n01_p4d12	34.0%	48%	151 bp	25%	0.6
H3VL5AFXY_n01_p4d2	56.4%	53%	151 bp	33%	0.9
H3VL5AFXY_n01_p4d3	66.7%	49%	151 bp	25%	2.0
H3VL5AFXY_n01_p4d4	16.2%	59%	151 bp	25%	0.5
H3VL5AFXY_n01_p4d5	30.2%	52%	151 bp	25%	0.3
H3VL5AFXY_n01_p4d6	45.2%	47%	151 bp	25%	1.5
H3VL5AFXY_n01_p4d7	40.0%	55%	151 bp	25%	0.3
H3VL5AFXY_n01_p4d8	42.2%	47%	151 bp	25%	1.2
H3VL5AFXY_n01_p4d9	27.5%	58%	151 bp	25%	0.5
H3VL5AFXY_n01_p4e1	29.3%	53%	151 bp	25%	0.4
H3VL5AFXY_n01_p4e10	61.7%	50%	151 bp	25%	0.7
H3VL5AFXY_n01_p4e11	45.8%	47%	151 bp	25%	1.6
H3VL5AFXY_n01_p4e12	19.7%	59%	151 bp	25%	0.5
H3VL5AFXY_n01_p4e2	33.6%	53%	151 bp	17%	0.4
H3VL5AFXY_n01_p4e3	32.6%	53%	151 bp	25%	0.4
H3VL5AFXY_n01_p4e4	25.0%	54%	151 bp	17%	0.3
H3VL5AFXY_n01_p4e5	59.4%	50%	151 bp	25%	1.1
H3VL5AFXY_n01_p4e6	45.1%	49%	151 bp	25%	0.7
H3VL5AFXY_n01_p4e7	32.5%	55%	151 bp	25%	0.4
H3VL5AFXY_n01_p4e8	57.2%	49%	151 bp	33%	1.1
H3VL5AFXY_n01_p4e9	40.9%	46%	151 bp	25%	1.0
H3VL5AFXY_n01_p4f1	35.4%	46%	151 bp	17%	0.7
H3VL5AFXY_n01_p4f10	69.2%	51%	151 bp	25%	1.1
H3VL5AFXY_n01_p4f11	43.9%	47%	151 bp	17%	1.4
H3VL5AFXY_n01_p4f12	38.9%	47%	151 bp	25%	0.6
H3VL5AFXY_n01_p4f2	46.9%	53%	151 bp	33%	0.6
H3VL5AFXY_n01_p4f3	32.4%	54%	151 bp	25%	0.8
H3VL5AFXY_n01_p4f4	79.9%	55%	151 bp	42%	1.7
H3VL5AFXY_n01_p4f5	37.4%	46%	151 bp	17%	0.5
H3VL5AFXY_n01_p4f6	33.5%	46%	151 bp	25%	0.7
H3VL5AFXY_n01_p4f7	22.3%	56%	151 bp	25%	0.4
H3VL5AFXY_n01_p4f8	24.9%	56%	151 bp	33%	0.4
H3VL5AFXY_n01_p4f9	61.2%	48%	151 bp	33%	1.9
H3VL5AFXY_n01_p4g1	20.0%	52%	151 bp	25%	0.2
H3VL5AFXY_n01_p4g10	43.7%	47%	151 bp	17%	1.2
H3VL5AFXY_n01_p4g11	55.9%	49%	151 bp	33%	1.2
H3VL5AFXY_n01_p4g12	37.8%	46%	151 bp	25%	1.0
H3VL5AFXY_n01_p4g2	55.9%	53%	151 bp	33%	0.6
H3VL5AFXY_n01_p4g3	36.0%	53%	151 bp	33%	0.6
H3VL5AFXY_n01_p4g4	27.0%	53%	151 bp	25%	0.3
H3VL5AFXY_n01_p4g5	45.4%	51%	151 bp	25%	0.6
H3VL5AFXY_n01_p4g6	40.1%	48%	151 bp	33%	1.0
H3VL5AFXY_n01_p4g7	23.4%	57%	151 bp	25%	0.5
H3VL5AFXY_n01_p4g8	48.0%	47%	151 bp	25%	1.5
H3VL5AFXY_n01_p4g9	43.6%	54%	151 bp	33%	0.4
H3VL5AFXY_n01_p4h1	39.4%	52%	151 bp	25%	0.4
H3VL5AFXY_n01_p4h10	37.9%	52%	151 bp	25%	0.5
H3VL5AFXY_n01_p4h11	39.4%	55%	151 bp	25%	0.6
H3VL5AFXY_n01_p4h12	19.2%	56%	151 bp	33%	0.3
H3VL5AFXY_n01_p4h2	46.1%	47%	151 bp	25%	1.1
H3VL5AFXY_n01_p4h3	45.7%	47%	151 bp	25%	1.1
H3VL5AFXY_n01_p4h4	60.1%	49%	151 bp	33%	1.3
H3VL5AFXY_n01_p4h5	42.0%	47%	151 bp	17%	1.0
H3VL5AFXY_n01_p4h6	46.5%	48%	151 bp	17%	0.8
H3VL5AFXY_n01_p4h7	58.1%	50%	151 bp	33%	0.7
H3VL5AFXY_n01_p4h8	26.9%	55%	151 bp	33%	0.5
H3VL5AFXY_n01_p4h9	26.4%	57%	151 bp	25%	0.4
H3VL5AFXY_n01_p5a1	0.0%	44%	151 bp	33%	0.0
H3VL5AFXY_n01_p5a10	34.6%	47%	151 bp	25%	0.4
H3VL5AFXY_n01_p5a11	46.6%	54%	151 bp	33%	0.7
H3VL5AFXY_n01_p5a12	5.3%	47%	151 bp	50%	0.0
H3VL5AFXY_n01_p5a2	44.1%	48%	151 bp	25%	0.6
H3VL5AFXY_n01_p5a3	44.3%	47%	151 bp	25%	0.9
H3VL5AFXY_n01_p5a4	72.9%	51%	151 bp	33%	0.7
H3VL5AFXY_n01_p5a5	40.9%	47%	151 bp	25%	0.8
H3VL5AFXY_n01_p5a6	40.2%	46%	151 bp	25%	0.8
H3VL5AFXY_n01_p5a7	46.5%	48%	151 bp	25%	0.8
H3VL5AFXY_n01_p5a8	40.2%	48%	151 bp	25%	0.9
H3VL5AFXY_n01_p5a9	28.5%	54%	151 bp	25%	0.6
H3VL5AFXY_n01_p5b1	27.4%	51%	151 bp	25%	0.3
H3VL5AFXY_n01_p5b10	11.6%	57%	151 bp	25%	0.2
H3VL5AFXY_n01_p5b11	49.6%	49%	151 bp	8%	0.4
H3VL5AFXY_n01_p5b12	42.4%	54%	151 bp	33%	0.6
H3VL5AFXY_n01_p5b2	56.6%	49%	151 bp	33%	0.6
H3VL5AFXY_n01_p5b3	56.7%	49%	151 bp	33%	0.6
H3VL5AFXY_n01_p5b4	28.1%	49%	151 bp	33%	0.3
H3VL5AFXY_n01_p5b5	26.6%	49%	151 bp	25%	0.3
H3VL5AFXY_n01_p5b6	46.8%	54%	151 bp	25%	0.3
H3VL5AFXY_n01_p5b7	49.7%	51%	151 bp	25%	0.4
H3VL5AFXY_n01_p5b8	48.6%	48%	151 bp	25%	1.1
H3VL5AFXY_n01_p5b9	35.3%	55%	151 bp	17%	0.4
H3VL5AFXY_n01_p5c1	45.6%	48%	151 bp	25%	0.7
H3VL5AFXY_n01_p5c10	39.3%	47%	151 bp	25%	0.4
H3VL5AFXY_n01_p5c11	37.9%	51%	151 bp	17%	0.5
H3VL5AFXY_n01_p5c12	55.5%	55%	151 bp	33%	0.6
H3VL5AFXY_n01_p5c2	43.0%	47%	151 bp	25%	1.0
H3VL5AFXY_n01_p5c3	40.9%	49%	151 bp	25%	0.3
H3VL5AFXY_n01_p5c4	40.3%	47%	151 bp	17%	1.1
H3VL5AFXY_n01_p5c5	44.9%	47%	151 bp	17%	0.9
H3VL5AFXY_n01_p5c6	21.3%	47%	151 bp	33%	0.1
H3VL5AFXY_n01_p5c7	52.3%	52%	151 bp	33%	0.4
H3VL5AFXY_n01_p5c8	26.8%	48%	151 bp	33%	0.2
H3VL5AFXY_n01_p5c9	38.4%	53%	151 bp	33%	0.3
H3VL5AFXY_n01_p5d1	45.0%	47%	151 bp	25%	1.0
H3VL5AFXY_n01_p5d10	34.1%	53%	151 bp	25%	0.4
H3VL5AFXY_n01_p5d11	39.4%	48%	151 bp	25%	0.7
H3VL5AFXY_n01_p5d12	44.0%	48%	151 bp	17%	1.0
H3VL5AFXY_n01_p5d2	42.6%	47%	151 bp	25%	1.0
H3VL5AFXY_n01_p5d3	45.4%	47%	151 bp	25%	1.1
H3VL5AFXY_n01_p5d4	48.9%	49%	151 bp	17%	0.6
H3VL5AFXY_n01_p5d5	38.4%	48%	151 bp	8%	0.3
H3VL5AFXY_n01_p5d6	43.1%	48%	151 bp	25%	0.4
H3VL5AFXY_n01_p5d7	17.4%	53%	151 bp	25%	0.2
H3VL5AFXY_n01_p5d8	26.9%	51%	151 bp	25%	0.1
H3VL5AFXY_n01_p5d9	30.9%	56%	151 bp	25%	0.6
H3VL5AFXY_n01_p5e1	55.1%	49%	151 bp	33%	1.6
H3VL5AFXY_n01_p5e10	42.5%	47%	151 bp	25%	0.7
H3VL5AFXY_n01_p5e11	46.4%	48%	151 bp	25%	0.9
H3VL5AFXY_n01_p5e12	23.2%	57%	151 bp	33%	1.2
H3VL5AFXY_n01_p5e2	34.7%	50%	151 bp	25%	0.5
H3VL5AFXY_n01_p5e3	33.5%	47%	151 bp	25%	0.3
H3VL5AFXY_n01_p5e4	43.6%	48%	151 bp	25%	0.8
H3VL5AFXY_n01_p5e5	52.2%	48%	151 bp	33%	1.5
H3VL5AFXY_n01_p5e6	13.2%	61%	151 bp	25%	0.9
H3VL5AFXY_n01_p5e7	47.6%	48%	151 bp	25%	1.2
H3VL5AFXY_n01_p5e8	50.9%	55%	151 bp	42%	0.8
H3VL5AFXY_n01_p5e9	39.7%	51%	151 bp	33%	1.2
H3VL5AFXY_n01_p5f1	59.2%	52%	151 bp	42%	0.9
H3VL5AFXY_n01_p5f10	36.3%	54%	151 bp	33%	0.7
H3VL5AFXY_n01_p5f11	21.4%	57%	151 bp	33%	0.6
H3VL5AFXY_n01_p5f12	62.7%	51%	151 bp	25%	1.1
H3VL5AFXY_n01_p5f2	43.6%	52%	151 bp	25%	0.5
H3VL5AFXY_n01_p5f3	58.2%	53%	151 bp	33%	0.8
H3VL5AFXY_n01_p5f4	36.3%	48%	151 bp	17%	0.5
H3VL5AFXY_n01_p5f5	37.5%	52%	151 bp	25%	0.6
H3VL5AFXY_n01_p5f6	9.6%	59%	151 bp	25%	0.4
H3VL5AFXY_n01_p5f7	46.4%	48%	151 bp	17%	1.3
H3VL5AFXY_n01_p5f8	39.8%	51%	151 bp	25%	0.4
H3VL5AFXY_n01_p5f9	40.1%	48%	151 bp	25%	0.6
H3VL5AFXY_n01_p5g1	71.3%	52%	151 bp	33%	1.0
H3VL5AFXY_n01_p5g10	39.8%	57%	151 bp	25%	0.7
H3VL5AFXY_n01_p5g11	32.2%	59%	151 bp	33%	0.9
H3VL5AFXY_n01_p5g12	39.5%	48%	151 bp	17%	0.6
H3VL5AFXY_n01_p5g2	33.1%	57%	151 bp	25%	0.6
H3VL5AFXY_n01_p5g3	38.8%	48%	151 bp	25%	0.5
H3VL5AFXY_n01_p5g4	45.7%	55%	151 bp	25%	0.6
H3VL5AFXY_n01_p5g5	68.9%	54%	151 bp	25%	0.7
H3VL5AFXY_n01_p5g6	28.8%	55%	151 bp	25%	0.1
H3VL5AFXY_n01_p5g7	29.3%	54%	151 bp	17%	0.5
H3VL5AFXY_n01_p5g8	47.4%	50%	151 bp	17%	0.4
H3VL5AFXY_n01_p5g9	41.3%	47%	151 bp	25%	0.8
H3VL5AFXY_n01_p5h1	35.5%	53%	151 bp	25%	0.5
H3VL5AFXY_n01_p5h10	19.6%	55%	151 bp	17%	0.1
H3VL5AFXY_n01_p5h11	58.3%	50%	151 bp	33%	2.0
H3VL5AFXY_n01_p5h12	26.3%	58%	151 bp	33%	1.0
H3VL5AFXY_n01_p5h2	46.0%	49%	151 bp	25%	0.6
H3VL5AFXY_n01_p5h3	34.3%	56%	151 bp	17%	0.6
H3VL5AFXY_n01_p5h4	44.9%	49%	151 bp	25%	1.0
H3VL5AFXY_n01_p5h5	27.0%	56%	151 bp	17%	0.5
H3VL5AFXY_n01_p5h6	53.3%	54%	151 bp	25%	0.3
H3VL5AFXY_n01_p5h7	41.6%	49%	151 bp	25%	0.7
H3VL5AFXY_n01_p5h8	66.7%	52%	151 bp	33%	0.9
H3VL5AFXY_n01_p5h9	17.3%	59%	151 bp	33%	0.5

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	FastQC	% Dups	% Duplicate Reads	`percent_duplicates`	None
\|\|	FastQC	% GC	Average % GC Content	`percent_gc`	None
\|\|	FastQC	Length	Average Sequence Length (bp)	`avg_sequence_length`	None
\|\|	FastQC	% Failed	Percentage of modules failed in FastQC report (includes those not plotted here)	`percent_fails`	None
\|\|	FastQC	M Seqs	Total Sequences (millions)	`total_sequences`	read_count

Run Statistics

Showing ¹/₁ rows and ⁴/₄ columns.

Number of Lanes	Total # of Single-End Reads	Total # PF Reads	Undetermined	% PhiX Aligned
4.0	173994946	148689064	8.2	2.8

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	Undetermined	Undetermined	`Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

Demultiplexing Report

Demultiplexing Report
Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.
Perfect: The percentage of reads in this library which have a barcode perfectly matching the barcode specified in TuboWeb. The remainder of reads have mismatches upto the max number of mismatches specified in TuboWeb (Allowed barcode mismatch option in your Library Pool).

Showing ¹⁹²/₁₉₂ rows and ³/₃ columns.

Library	Total Read Count	Portion (%)	Perfect (%)
p5h5	458459	0.3	95.7
p5g1	1007410	0.7	94.7
p4a11	706242	0.5	95.4
p4c2	511258	0.4	95.8
p4h1	435688	0.3	94.9
p5d4	607711	0.4	94.4
p5e8	782378	0.6	93.4
p5d12	1015726	0.7	94.9
p5e3	333103	0.2	95.3
p4e12	511824	0.4	94.9
p4e3	409849	0.3	95.3
p5c5	863840	0.6	94.9
p5b6	290742	0.2	95.4
p5b11	415747	0.3	94.8
p5g12	623668	0.5	94.1
p5d11	739095	0.5	95.1
p4g9	444154	0.3	95.1
p5e2	520679	0.4	95.3
p5f11	613330	0.4	96.0
p4a6	1049020	0.8	95.7
p4d6	1473089	1.1	95.4
p5b10	249476	0.2	95.0
p4d11	685657	0.5	95.4
p5a11	692148	0.5	95.8
p4d3	2033678	1.5	95.2
p5h10	84395	0.1	95.4
p5f6	356216	0.3	96.1
p4d1	608509	0.4	94.9
p5c1	677956	0.5	94.7
p4b1	755676	0.6	95.0
p4b5	1462406	1.1	94.2
p5e1	1622366	1.2	95.3
p4h3	1136092	0.8	94.9
p4g1	238107	0.2	94.5
p4c4	1171700	0.9	94.7
p5f4	531498	0.4	94.8
p4e4	318597	0.2	93.1
p5c9	336902	0.2	94.2
p5g8	396346	0.3	92.5
p4d2	934454	0.7	95.7
p5a10	402576	0.3	94.9
p5e11	899308	0.7	94.3
p4c12	816990	0.6	94.7
p5b2	644590	0.5	95.5
p5f9	648572	0.5	95.5
p4f6	684186	0.5	95.8
p4g7	464086	0.3	94.8
p5a9	552595	0.4	94.8
p4e10	718000	0.5	94.8
p5e4	835101	0.6	94.1
p4g6	989994	0.7	94.8
p4e1	359832	0.3	95.4
p5g5	680150	0.5	94.8
p4c1	1162262	0.9	95.1
p5h6	297123	0.2	95.3
p5d8	124410	0.1	93.1
p4g12	972069	0.7	94.0
p5a12	94.0	0.0	38.5
p4f5	508656	0.4	94.4
p5a3	874608	0.6	95.5
p4e8	1139099	0.8	94.8
p5d7	232482	0.2	94.9
p5c11	513975	0.4	94.8
p5e9	1169701	0.9	94.6
p4f3	750202	0.5	96.3
p5b3	551750	0.4	95.5
p4e7	387720	0.3	95.0
p4d5	337695	0.2	94.8
p4e6	689356	0.5	95.5
p5d5	306966	0.2	94.7
p5d3	1082836	0.8	95.4
p4f10	1050731	0.8	95.4
p5c12	562452	0.4	94.9
p5a2	563920	0.4	95.2
p4b9	412514	0.3	95.8
p5f5	568097	0.4	96.1
p5b4	276342	0.2	94.6
p5c6	140189	0.1	94.6
p4a9	447338	0.3	95.8
p5h11	1988262	1.5	95.7
p4h2	1106370	0.8	95.0
p4b4	1060691	0.8	94.5
p4b2	449799	0.3	96.0
p4d12	560077	0.4	95.0
p4g2	600366	0.4	95.0
p5d9	614671	0.5	94.2
p5c10	442583	0.3	94.5
p4f8	408997	0.3	96.2
p4d10	1221100	0.9	95.4
p5g6	74542	0.1	94.8
p5g2	611438	0.4	95.0
p4h9	448583	0.3	95.3
p5b5	289708	0.2	94.8
p4g8	1455639	1.1	94.5
p4a4	271589	0.2	95.2
p4b8	1109591	0.8	95.2
p4c11	460771	0.3	95.3
p4f7	444007	0.3	95.7
p4f12	645956	0.5	95.2
p5c3	303124	0.2	95.2
p5f7	1300560	1.0	95.2
p4a3	832799	0.6	95.5
p4b10	426738	0.3	95.7
p5e6	864028	0.6	94.9
p5c7	375207	0.3	94.9
p4g4	318626	0.2	94.2
p4b12	565533	0.4	95.0
p4g10	1191384	0.9	94.2
p4c3	633084	0.5	95.1
p4e9	962406	0.7	94.9
p5e10	743541	0.5	94.2
p5a7	800373	0.6	95.4
p4h7	731337	0.5	94.8
p5e5	1481770	1.1	95.4
p4e2	413248	0.3	95.4
p4b6	280740	0.2	96.0
p4h6	792912	0.6	94.9
p5h2	569901	0.4	94.8
p5h1	511164	0.4	95.2
p5f1	931022	0.7	96.1
p4d4	460326	0.3	94.8
p5e7	1236107	0.9	94.4
p5a5	790956	0.6	95.3
p4h4	1344505	1.0	94.5
p5b9	403965	0.3	94.2
p4h10	483780	0.4	95.5
p4h11	564726	0.4	95.0
p5b12	588395	0.4	95.3
p5c2	1025792	0.8	94.8
p4e11	1575911	1.2	94.7
p4f9	1921443	1.4	95.9
p4d7	345798	0.3	95.3
p5g3	462416	0.3	94.3
p5g9	827140	0.6	93.4
p4c8	469679	0.3	95.3
p5d1	1001354	0.7	95.0
p5d6	376225	0.3	95.1
p4a5	1390106	1.0	94.3
p5h7	743891	0.5	95.4
p4g11	1216409	0.9	94.2
p4d9	483134	0.4	95.6
p4f4	1684097	1.2	95.2
p5a1	139.0	0.0	21.6
p4c7	1091098	0.8	95.0
p4b3	577003	0.4	96.1
p4f2	598427	0.4	96.2
p4a8	1094430	0.8	95.6
p5a8	865125	0.6	94.3
p5b7	382285	0.3	95.0
p4h5	979629	0.7	93.8
p5a4	670163	0.5	94.6
p4g3	637749	0.5	95.0
p4g5	642176	0.5	94.1
p5d10	425670	0.3	95.3
p5h8	859911	0.6	94.8
p5f10	746847	0.5	95.9
p5d2	1012418	0.7	95.1
p5f8	361917	0.3	95.2
p5b1	276302	0.2	94.8
p4e5	1073086	0.8	93.8
p4c5	434488	0.3	94.6
p5c4	1144669	0.8	94.3
p4a1	700367	0.5	96.1
p5h3	610226	0.4	95.5
p4f1	739378	0.5	95.6
p5g10	687874	0.5	94.8
p5h9	509868	0.4	94.9
p4b11	751919	0.6	95.7
p4c10	476661	0.3	94.6
p4d8	1220803	0.9	95.1
p5g7	514169	0.4	95.0
p5f12	1066156	0.8	95.5
p4b7	1054003	0.8	94.9
p5g11	897459	0.7	94.8
p4f11	1428185	1.0	95.3
p4a7	609091	0.4	96.0
p4h12	313095	0.2	95.2
p5b8	1068881	0.8	94.2
p5g4	628536	0.5	94.4
p5h4	956106	0.7	95.2
p5e12	1162774	0.9	95.2
p4a12	134573	0.1	94.9
p4h8	541730	0.4	95.1
p5a6	822788	0.6	95.6
p5f3	766263	0.6	96.4
p4c6	375120	0.3	95.6
p5h12	980692	0.7	95.8
p5c8	204399	0.1	93.9
p5f2	531742	0.4	95.9
p4c9	263988	0.2	95.5
p4a2	929819	0.7	95.5
p4a10	1099038	0.8	96.0

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total Read Count	Total Read Count	`Total Read Count`	None
\|\|	Portion (%)	Portion (%)	`Portion (%)`	None
\|\|	Perfect (%)	Perfect (%)	`Perfect (%)`	None

FastQC

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

Sequence Quality Histograms

The mean quality value across each base position in the read. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

Click a heatmap row to see a line plot for that dataset.

rollover for sample name

Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base N Content

The percentage of base calls at each position for which an N was called. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Length Distribution

All samples have sequences of a single length (151bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Overrepresented sequences

The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

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About MultiQC

General Statistics

General Statistics: Columns

Run Statistics

Table Bfhv: Columns

Demultiplexing Report

Table Abep: Columns

FastQC

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

rollover for sample name

Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

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